LXL04_021438 | RubberDandelionOmics

Gene overview

LXL04_021438

Reference: OH-1004 Chr: Chr04 Coordinates: 129761614-129765900 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1552 bp · LXL04_021438|LXL04_021438|OH1004|cDNA

CTTCTTGTTTTCCTGATCGTCTCTTTCTCACTCACTCACTCTGTTACTAAACAAAATGAAGAACCGTCATCTCTTTCGATCAGCCATGGCCGTTACCTCCTCCAAGATTCGATCATCAGTAAGACATGTGCAGACTCTTTCCACCGTCAGATGGAAAAGTACCATTGCTGCCATGGCTGATGATGATGGATACAAGGGACATGGCATGTTAGCACCTTTCACAGCCGGCTGGCAAACTACTGAATCAAACCCATTGGTTA...

CDS

Download CDS FASTA

1512 bp · LXL04_021438|LXL04_021438|OH1004|CDS

CTGTTACTAAACAAAATGAAGAACCGTCATCTCTTTCGATCAGCCATGGCCGTTACCTCCTCCAAGATTCGATCATCAGTAAGACATGTGCAGACTCTTTCCACCGTCAGATGGAAAAGTACCATTGCTGCCATGGCTGATGATGATGGATACAAGGGACATGGCATGTTAGCACCTTTCACAGCCGGCTGGCAAACTACTGAATCAAACCCATTGGTTATAGAGAAATCAGAGGGATCTTATGTGTATGATATAAATGG...

Protein

Download Protein FASTA

503 aa · LXL04_021438|LXL04_021438|OH1004|PROTEIN

MLLNKMKNRHLFRSAMAVTSSKIRSSVRHVQTLSTVRWKSTIAAMADDDGYKGHGMLAPFTAGWQTTESNPLVIEKSEGSYVYDINGKKYLDALAGLWCNPLGGNEARLIAAANKQLNTLPFYHSFWNRTTKPSLDLASELLGMFTSNKMAKVFFTNSGSDANDTQVKLVWYYNNALGRPNKKKIIARTKSYHGSTLVSASLSGLPALHQNFDLPTPFVLHTDCPHYWRFHLPGETEEEFSTRLATNLENLVLKEGPETI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021438`
TK1151 ID	TkA05G394680
OH-1004 ID	LXL04_021438
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 99.006 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021438

Location Chr04:129761614-129765900 (-)

Description Similar to GABA-TP3: Gamma aminobutyrate transaminase 3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0614600`	Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate as amino-group acceptor, but not 2-oxoglutarate.	No verified direct reference in this release
`UniProt: B8BBZ7`	Transaminase that degrades gamma-amino butyric acid (GABA).	No verified direct reference in this release
`UniProt: Q01K11`	Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate as amino-group acceptor, but not 2-oxoglutarate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021438 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009102 biotin biosynthetic process Biological Process

GO:0009448 gamma-aminobutyric acid metabolic process Biological Process

GO:0009821 alkaloid biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity Molecular Function

GO:0030170 pyridoxal phosphate binding Molecular Function

GO:0034387 4-aminobutyrate:pyruvate transaminase activity Molecular Function

KEGG gene cross-reference

dosa:Os04g0614600

sly:543873

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.867

Rank 1 · LXL04_021438 · OH-1004

Cytoplasm0.100

Rank 2 · LXL04_021438 · OH-1004

Nucleus0.046

Rank 3 · LXL04_021438 · OH-1004

Plastid0.028

Rank 4 · LXL04_021438 · OH-1004

Peroxisome0.019

Rank 5 · LXL04_021438 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00202.28Aminotran_370-488 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021438	`PF00202.28`	Aminotran_3	70	488	1.3e-89	301.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7XN11`	Oryza sativa subsp. japonica	Gamma-aminobutyrate transaminase 1, mitochondrial	75.776%	Swiss-Prot	strong database homology
`B8BBZ7`	Oryza sativa subsp. indica	Probable gamma-aminobutyrate transaminase 3, mitochondrial	76.793%	Swiss-Prot	strong database homology
`Q01K11`	Oryza sativa subsp. indica	Gamma-aminobutyrate transaminase 1, mitochondrial	75.776%	Swiss-Prot	strong database homology

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