Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1323 bp · LXL04_015809|LXL04_015809|OH1004|cDNA
ATGTTGGTCTCAAGCCGGTTGACGAGGTGCCTGGCTCTTCCACCATTGTCCACCACTTCCACCGCCCTTCAGGATATTGCTTCAAACCAAGCCAAGGGTGTCGCAAAGGTCATCCTAAAGAAGGGGAAAACACAACTGTTTCGTGATGGAAGCCCAATGGTTTACAGTGGTGCAGTCGATAGAATCATTGGAAGACCGCCCCCAAAAACAGGCGACATGGTGCTGGTGGCTGACGGGACAGAAAAGCCAATCGCCTGGGG...
1323 bp · LXL04_015809|LXL04_015809|OH1004|CDS
ATGTTGGTCTCAAGCCGGTTGACGAGGTGCCTGGCTCTTCCACCATTGTCCACCACTTCCACCGCCCTTCAGGATATTGCTTCAAACCAAGCCAAGGGTGTCGCAAAGGTCATCCTAAAGAAGGGGAAAACACAACTGTTTCGTGATGGAAGCCCAATGGTTTACAGTGGTGCAGTCGATAGAATCATTGGAAGACCGCCCCCAAAAACAGGCGACATGGTGCTGGTGGCTGACGGGACAGAAAAGCCAATCGCCTGGGG...
Protein
Download Protein FASTA440 aa · LXL04_015809|LXL04_015809|OH1004|PROTEIN
MLVSSRLTRCLALPPLSTTSTALQDIASNQAKGVAKVILKKGKTQLFRDGSPMVYSGAVDRIIGRPPPKTGDMVLVADGTEKPIAWGLYNSSSMFCVRLMQLDEEVSGDPCCALNMEKLLETRIDAAMRLRNNLGLPSANTNAYRLVNSEGDRLSGLIIDVFGDLAVIASSAAWVERYKEHIKKCVRGLEVIKSVVWRPSTEILKEEGLDVGDVGEQESSERVKVVENGISYMISLDGQKTGFYADQRENREFISTISDG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_015809 |
|---|---|
| TK1151 ID | TkA02G207280 |
| OH-1004 ID | LXL04_015809 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 96.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_015809 |
|---|---|
| Location | Chr03:86563425-86565867 (+) |
| Description | Similar to rlmI: Ribosomal RNA large subunit methyltransferase I (Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0005737 cytoplasm Cellular Component GO:0003723 RNA binding Molecular Function GO:0016434 rRNA (cytosine) methyltransferase activity Molecular Function |
| KEGG gene cross-reference | aha:AHA_2227 amc:MADE_1008550 asa:ASA_2074 eta:ETA_20930 ppr:PBPRA2194 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF17785.8PUA_337-100 aaPF10672.16Methyltrans_SAM218-383 aaPF02475.24TRM5-TYW2_MTfase226-342 aaPF13847.13Methyltransf_31258-383 aaPF03602.22Cons_hypoth95258-341 aaPF05175.21MTS258-349 aaPF13649.13Methyltransf_25263-338 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_015809 | PF17785.8 | PUA_3 | 37 | 100 | 5.9e-11 | 42.7 |
| LXL04_015809 | PF10672.16 | Methyltrans_SAM | 218 | 383 | 1.3e-15 | 58.1 |
| LXL04_015809 | PF02475.24 | TRM5-TYW2_MTfase | 226 | 342 | 2e-07 | 31.8 |
| LXL04_015809 | PF13847.13 | Methyltransf_31 | 258 | 383 | 3.4e-09 | 37.3 |
| LXL04_015809 | PF03602.22 | Cons_hypoth95 | 258 | 341 | 5.7e-09 | 36.6 |
| LXL04_015809 | PF05175.21 | MTS | 258 | 349 | 2.4e-06 | 27.9 |
| LXL04_015809 | PF13649.13 | Methyltransf_25 | 263 | 338 | 6.7e-07 | 30.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.