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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G207280
Reference: TK1151 Chr: Chr02 Coordinates: 52912997-52916606 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1657 bp · TkA02G207280|TK1151|cDNA

CTATAGTGAAAGCTATAGTGGATGCTCTTATCAAATCCCTAATATCGTCCCAAAGGCGGAGGATCGAGCCAGAGCAGCTGAGATATAGGAAAACAATCCGAACTTCAAACAGCTTACCGAGTAGAGGACGTTCGCTATGTTGGTCTCAAGCCGGTTGACGAGGTGCCTGGCTCTTCCACCATTGACCACCACTTCCACCGCCCTTCAGGATATTGCTTCAAACCAAGCCAAGGGTGTCGCAAAGGTCATCCTAAAGAAGG...

CDS

Download CDS FASTA

1311 bp · TkA02G207280|TK1151|CDS

ATGTTGGTCTCAAGCCGGTTGACGAGGTGCCTGGCTCTTCCACCATTGACCACCACTTCCACCGCCCTTCAGGATATTGCTTCAAACCAAGCCAAGGGTGTCGCAAAGGTCATCCTAAAGAAGGGGAAAACACAACTGTTTCGTGATGGAAGCCCAATGGTTTACAGTGGTGCAGTCGATAGAATTATTGGAAGACCGCCCCCAAAAACAGGGGACATGGTGCTGGTGGCTGACGGGACAGAAAAGCCTATCGCTTGGGG...

Protein

Download Protein FASTA

436 aa · TkA02G207280|TK1151|PROTEIN

MLVSSRLTRCLALPPLTTTSTALQDIASNQAKGVAKVILKKGKTQLFRDGSPMVYSGAVDRIIGRPPPKTGDMVLVADGTEKPIAWGLYNSCSMFCVRLMQLDEEVSGDPCCALNMEKLLETRIDAAMKLRNNLGLPSANTNAYRLVNSEGDRLSGLIIDVFGDLAVIASSAAWVERYKEHIKKCVRGLKVINSVVWRPSIEILKEEGLDVGDVGEQESSERVKVVENGISYMISLDGQKTGFYADQRENREFISTISDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G207280
TK1151 IDTkA02G207280
OH-1004 IDLXL04_015809
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G207280
LocationChr02:52912997-52916606 (+)
DescriptionSimilar to rlmI: Ribosomal RNA large subunit methyltransferase I (Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015809 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005737 cytoplasm Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0016434 rRNA (cytosine) methyltransferase activity Molecular Function
KEGG gene cross-reference
aha:AHA_2227
amc:MADE_1008550
asa:ASA_2074
eta:ETA_20930
ppr:PBPRA2194
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.804
Rank 1 · TkA02G207280 · TK1151
Plastid0.155
Rank 2 · TkA02G207280 · TK1151
Cytoplasm0.084
Rank 3 · TkA02G207280 · TK1151
Nucleus0.063
Rank 4 · TkA02G207280 · TK1151
Cell membrane0.017
Rank 5 · TkA02G207280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17785PUA_337-100 aa
PF20169DUF6537152-193 aa
PF08241Methyltransf_11164-190 aa
PF14578GTP_EFTU_D4183-240 aa
PF03602Cons_hypoth95187-206 aa
PF10672Methyltrans_SAM218-384 aa
PF02475TRM5-TYW2_MTfase226-342 aa
PF13489Methyltransf_23250-338 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G207280PF17785PUA_3371002.4e-1040.7
TkA02G207280PF20169DUF65371521930.3511.4
TkA02G207280PF08241Methyltransf_111641900.0003721.8
TkA02G207280PF14578GTP_EFTU_D41832400.03714.6
TkA02G207280PF03602Cons_hypoth951872063.5e-0937.3
TkA02G207280PF10672Methyltrans_SAM2183841.3e-1661.4
TkA02G207280PF02475TRM5-TYW2_MTfase2263425.4e-0833.7
TkA02G207280PF13489Methyltransf_232503380.000221.8
TkA02G207280PF01209Ubie_methyltran2553200.02614.6
TkA02G207280PF01728FtsJ2563700.0005620.6
TkA02G207280PF06325PrmA2573180.0001522.0
TkA02G207280PF13847Methyltransf_312583846.4e-1039.7
TkA02G207280PF03602Cons_hypoth952583413.5e-0937.3
TkA02G207280PF05175MTS2583482.1e-0628.2
TkA02G207280PF01189Methyltr_RsmB-F2583810.004817.3
TkA02G207280PF02384N6_Mtase2583410.006316.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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