Coverage, FPKM and TPM each contain 98,473 fixed reconstruction loci and 109 public RNA-seq runs. Complete matrices, sample sources, the frozen model, checksums, and verification/reconstruction scripts are available.
View matrices and reproducibility resources Download the complete reviewer package ZIP TK1151-guided Transcriptome Assembly and Quantification
Supports processed-data verification and matrix reconstruction from StringTie outputs. Raw RNA-seq was not rerun for this package, and runs from different studies are not one biological replicate set.
Only public downloadable resources and verified processed outputs are published. Internal temporary files and unverified matrices are hidden by default.
Download a verified site mirror or visit its original source. SHA-256 checksums refer to the site mirror; cite the original accession and publication when using the data.
Reference genome · 357335789 bytes
OH-1004 / OSU_TarKok_2.0 genome FASTA from NCBI Assembly GCA_047496595.1.
Data source: NCBI Assembly GCA_047496595.1 · GCA_047496595.1
The current NCBI Datasets assembly page does not list an associated publication; only the original assembly accession and source page are shown here.
Mirror file: RubberDandelion_OSU_TarKok_2.0_genome.fna.gz
SHA-256: 24e1c8f3c7ea21f88fc6d804291777e1ec4e404627de95c2b994fba71ce7e969
Genome annotation · 7820060 bytes
OH-1004 / OSU_TarKok_2.0 GFF3 gene model annotation.
Data source: NCBI Assembly GCA_047496595.1 · GCA_047496595.1
The current NCBI Datasets assembly page does not list an associated publication; only the original assembly accession and source page are shown here.
Mirror file: RubberDandelion_OSU_TarKok_2.0_genome.gff.gz
SHA-256: 9201e9ef4918ea8ce4aded1eed8f9a6b6548ce9523727c66ca9475262448ea86
CDS sequences · 16072519 bytes
OH-1004 / OSU_TarKok_2.0 CDS FASTA.
Data source: NCBI Assembly GCA_047496595.1 · GCA_047496595.1
The current NCBI Datasets assembly page does not list an associated publication; only the original assembly accession and source page are shown here.
Mirror file: RubberDandelion_OSU_TarKok_2.0_cds.fna.gz
SHA-256: 8365c440d384c0f54c811bbb72703205b8efc47a41cd34e23cf764aa6b3ba820
Protein sequences · 8875630 bytes
OH-1004 / OSU_TarKok_2.0 protein FASTA.
Data source: NCBI Assembly GCA_047496595.1 · GCA_047496595.1
The current NCBI Datasets assembly page does not list an associated publication; only the original assembly accession and source page are shown here.
Mirror file: RubberDandelion_OSU_TarKok_2.0_protein.faa.gz
SHA-256: 36e25dc8b0692de06ab0bad353f6541a84d75bc9b2175949c90fa950322daadf
Legacy reference sequences · 18335596 bytes
Legacy GWHAAAA00000000 CDS FASTA for old-ID bridging and historical comparison.
Data source: GWH GWHAAAA00000000 · GWHAAAA00000000
Publication: Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis · Lin T.; Xu X.; Ruan J.; Liu S.; Wu S.; Shao X.; Wang X.; Gan L.; Qin B.; Yang Y.; et al. · National Science Review (2018) · DOI: 10.1093/nsr/nwx101 · Paper
This paper reported the TKS line 1151 draft genome resource; these files are kept here for old-ID bridging and historical comparison.
Mirror file: RubberDandelion_GWHAAAA00000000_CDS.fasta.gz
SHA-256: 5e809f96f270e1f6aa75bb17a981fff6e7957a902653d97c2f506243e72e1570
Legacy reference sequences · 12995401 bytes
Legacy GWHAAAA00000000 protein FASTA for old-ID bridging and historical comparison.
Data source: GWH GWHAAAA00000000 · GWHAAAA00000000
Publication: Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis · Lin T.; Xu X.; Ruan J.; Liu S.; Wu S.; Shao X.; Wang X.; Gan L.; Qin B.; Yang Y.; et al. · National Science Review (2018) · DOI: 10.1093/nsr/nwx101 · Paper
This paper reported the TKS line 1151 draft genome resource; these files are kept here for old-ID bridging and historical comparison.
Mirror file: RubberDandelion_GWHAAAA00000000_protein.faa.gz
SHA-256: 689f29e17896dabe4847c5536a7bca5ece4ae0a9268c4856fbfb11d64febd0ee
In-house expression data · 5354712 bytes
Original author-supplied K445 salt-stress FPKM matrix; root and leaf, 0, 100 or 200 mM NaCl, sampled after 30 days. Related study: Cao et al. (2026), DOI 10.1016/j.indcrop.2026.124253
Data source: Authors' research team
Related team study: Cao et al. (2026). K445 material and publication association confirmed by the data provider; public sequencing accession not supplied.
Mirror file: RubberDandelionOmics_salt_stress_FPKM_original.xlsx
SHA-256: eb7f6752ea567a16cee2dfdf2917e1a6b13e1beaf8970f7c51323d8d2b1b48c5
Sources, original download links, software references, publications and derived-file checksums are organized by category. Unresolved historical checksums, paper links and revisions are explicitly marked.