Complete public expression matrices and reproducibility resources
Coverage, FPKM and TPM each contain 98,473 fixed reconstruction loci and 109 public RNA-seq runs. Complete matrices, sample sources, the frozen model, checksums, and verification/reconstruction scripts are available.
View matrices and reproducibility resources Download the complete reviewer package ZIP
Supports processed-data verification and matrix reconstruction from StringTie outputs. Raw RNA-seq was not rerun for this package, and runs from different studies are not one biological replicate set.
Uniform Transcriptome Model v4
Fixed uniform model v4: 109 samples and 98,473 genes; Coverage, FPKM and TPM passed independent cell-level acceptance. Legacy TK1151 matrices and derived caches are quarantined. Study designs must be checked before differential analysis.
Accepted New Release
TK1151_UNIFORM_V4_20261003 · 2026-10-03T08:13:08.521949+00:00
TK1151 / GWHBCHF reference; all samples use fixed gene and transcript identities. Gene TPM and FPKM sum the actual fixed-transcript outputs; Coverage follows the accepted correction. Units are published separately. This version provides no counts/CPM and contains no legacy TK1151 values.
| Metric / file | Samples | SHA256 | Download |
|---|---|---|---|
COVERAGETK1151_uniform_coverage_matrix.tsv | 109 | d6f21ad1ac0322dafa3e027b2482defa6990d4a634a2df3495ee3a45f6e51eca | TSV |
FPKMTK1151_uniform_fpkm_matrix.tsv | 109 | adbf1e60097207700fac9f09c644d26456db10f8472a031a5df2a9e255c3c90f | TSV |
TPMTK1151_uniform_tpm_matrix.tsv | 109 | 499a3298df26fc29a72a53cecf5cb51427b03bdb530da56be3768ba0aa3b3dd1 | TSV |
Identity Relations and Legacy Quarantine
TKU identifiers are fixed uniform-model gene keys; original reference IDs remain unchanged. Reference IDs are relations. Only unambiguous, non-quarantined one-to-one relations serve as query aliases. Nine previously quarantined references and one-to-many relations are not restored or summed automatically; use explicit TKU keys to query individual loci. A uniform locus is not necessarily an annotated protein-coding gene.
Legacy TK1151 expression layers, merged-matrix and per-sample exports, and their coexpression caches are removed from public queries. Originals are retained for traceability and controlled rollback. OH-1004 and original publication expression remain separate datasets. Uniform-model coexpression has not been recomputed; legacy TK1151 networks are not shown as new-model results.
Uniform gene identities TSV · Reference relations TSV · Release manifest JSON · Ingestion acceptance JSON