Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00243

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 287

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00243

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00243 Chr05 97670650-107054038 Chr04 129078094-138565451 mixed High 87 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00243`	Chr05:97670650-107054038	Chr04:129078094-138565451	mixed	287	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 287 · Showing 201–287 · Page 2/2

Previous Download All Anchors TSV

TkA05G417830 → LXL04_021738

100.0%

TkA05G417840 → LXL04_021739

88.7%

TkA05G417940 → LXL04_021740

98.0%

TkA05G417950 → LXL04_021741

99.0%

TkA05G418170 → LXL04_021743

99.5%

TkA05G418350 → LXL04_021745

100.0%

TkA05G418380 → LXL04_021746

100.0%

TkA05G418460 → LXL04_021747

100.0%

TkA05G418480 → LXL04_021748

100.0%

TkA05G418490 → LXL04_021749

100.0%

TkA05G418570 → LXL04_021750

100.0%

TkA05G418650 → LXL04_021751

96.4%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA05G417830`	`LXL04_021738`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G417840`	`LXL04_021739`	`JCVI_TKOH_00243`	88.7	100.0 / 33.946	Review
`TkA05G417940`	`LXL04_021740`	`JCVI_TKOH_00243`	98.0	99.329 / 30.39	Review
`TkA05G417950`	`LXL04_021741`	`JCVI_TKOH_00243`	99.0	51.399 / 18.773	Complex
`TkA05G418170`	`LXL04_021743`	`JCVI_TKOH_00243`	99.5	100.0 / 94.884	Complex
`TkA05G418350`	`LXL04_021745`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G418380`	`LXL04_021746`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G418460`	`LXL04_021747`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G418480`	`LXL04_021748`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G418490`	`LXL04_021749`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G418570`	`LXL04_021750`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G418650`	`LXL04_021751`	`JCVI_TKOH_00243`	96.4	100.0 / 100.0	Strict
`TkA05G418660`	`LXL04_021753`	`JCVI_TKOH_00243`	90.4	100.0 / 100.0	Probable
`TkA05G418670`	`LXL04_021754`	`JCVI_TKOH_00243`	99.6	88.321 / 100.0	Complex
`TkA05G418700`	`LXL04_021756`	`JCVI_TKOH_00243`	100.0	94.9 / 98.083	Strict
`TkA05G418710`	`LXL04_021757`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G418740`	`LXL04_021758`	`JCVI_TKOH_00243`	100.0	97.525 / 97.044	Review
`TkA05G419110`	`LXL04_021759`	`JCVI_TKOH_00243`	100.0	100.0 / 47.791	Review
`TkA05G419190`	`LXL04_021760`	`JCVI_TKOH_00243`	100.0	63.317 / 48.649	Complex
`TkA05G419370`	`LXL04_021762`	`JCVI_TKOH_00243`	97.3	100.0 / 100.0	Strict
`TkA05G419520`	`LXL04_021764`	`JCVI_TKOH_00243`	93.1	70.345 / 41.296	Review
`TkA05G419620`	`LXL04_021765`	`JCVI_TKOH_00243`	96.5	43.07 / 91.244	Review
`TkA05G419750`	`LXL04_021766`	`JCVI_TKOH_00243`	97.9	100.0 / 100.0	Strict
`TkA05G419770`	`LXL04_021767`	`JCVI_TKOH_00243`	99.7	90.647 / 100.0	Strict
`TkA05G419890`	`LXL04_021772`	`JCVI_TKOH_00243`	88.3	99.907 / 96.942	Review
`TkA05G420200`	`LXL04_021775`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G420260`	`LXL04_021772`	`JCVI_TKOH_00243`	83.9	96.552 / 95.953	Complex
`TkA05G420300`	`LXL04_021776`	`JCVI_TKOH_00243`	98.7	95.806 / 49.661	Review
`TkA05G420320`	`LXL04_021778`	`JCVI_TKOH_00243`	100.0	88.055 / 74.566	Complex
`TkA05G420330`	`LXL04_021779`	`JCVI_TKOH_00243`	93.7	100.0 / 87.28	Complex
`TkA05G420600`	`LXL04_021781`	`JCVI_TKOH_00243`	93.7	83.495 / 79.909	Probable
`TkA05G420750`	`LXL04_021783`	`JCVI_TKOH_00243`	100.0	100.0 / 93.023	Review
`TkA05G420980`	`LXL04_021784`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Complex
`TkA05G420990`	`LXL04_021785`	`JCVI_TKOH_00243`	99.7	100.0 / 71.111	Probable
`TkA05G421000`	`LXL04_021786`	`JCVI_TKOH_00243`	98.4	100.0 / 100.0	Strict
`TkA05G421080`	`LXL04_021787`	`JCVI_TKOH_00243`	99.1	100.0 / 100.0	Strict
`TkA05G421100`	`LXL04_021788`	`JCVI_TKOH_00243`	98.2	100.0 / 100.0	Complex
`TkA05G421250`	`LXL04_021791`	`JCVI_TKOH_00243`	87.2	81.739 / 38.367	Review
`TkA05G421300`	`LXL04_021796`	`JCVI_TKOH_00243`	81.0	99.808 / 65.738	Complex
`TkA05G421600`	`LXL04_021794`	`JCVI_TKOH_00243`	63.9	85.185 / 71.429	Review
`TkA05G421730`	`LXL04_021794`	`JCVI_TKOH_00243`	98.9	34.962 / 29.524	Complex
`TkA05G421740`	`LXL04_021804`	`JCVI_TKOH_00243`	99.8	100.0 / 80.153	Complex
`TkA05G421800`	`LXL04_021796`	`JCVI_TKOH_00243`	81.1	99.904 / 65.801	Review
`TkA05G421890`	`LXL04_021798`	`JCVI_TKOH_00243`	54.0	94.074 / 40.663	Complex
`TkA05G421950`	`LXL04_021802`	`JCVI_TKOH_00243`	88.7	95.816 / 18.394	Complex
`TkA05G422520`	`LXL04_021802`	`JCVI_TKOH_00243`	87.0	100.0 / 31.325	Complex
`TkA05G422530`	`LXL04_021788`	`JCVI_TKOH_00243`	99.6	99.618 / 58.916	Review
`TkA05G422640`	`LXL04_021790`	`JCVI_TKOH_00243`	91.1	100.0 / 42.429	Complex
`TkA05G422950`	`LXL04_021796`	`JCVI_TKOH_00243`	72.8	100.0 / 8.55	Complex
`TkA05G423080`	`LXL04_021796`	`JCVI_TKOH_00243`	56.9	99.754 / 69.158	Complex
`TkA05G423390`	`LXL04_021788`	`JCVI_TKOH_00243`	84.3	81.884 / 27.314	Complex
`TkA05G423490`	`LXL04_021794`	`JCVI_TKOH_00243`	97.8	34.962 / 29.524	Complex
`TkA05G423520`	`LXL04_021804`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Complex
`TkA05G423600`	`LXL04_021805`	`JCVI_TKOH_00243`	98.7	100.0 / 100.0	Strict
`TkA05G424130`	`LXL04_021807`	`JCVI_TKOH_00243`	99.7	100.0 / 100.0	Strict
`TkA05G424150`	`LXL04_021808`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Complex
`TkA05G424820`	`LXL04_021808`	`JCVI_TKOH_00243`	93.3	75.635 / 75.635	Complex
`TkA05G424970`	`LXL04_021809`	`JCVI_TKOH_00243`	99.1	100.0 / 100.0	Complex
`TkA05G425000`	`LXL04_021811`	`JCVI_TKOH_00243`	100.0	100.0 / 67.64	Complex
`TkA05G425030`	`LXL04_021812`	`JCVI_TKOH_00243`	98.9	83.784 / 100.0	Strict
`TkA05G425190`	`LXL04_021814`	`JCVI_TKOH_00243`	99.5	100.0 / 100.0	Complex
`TkA05G425200`	`LXL04_021815`	`JCVI_TKOH_00243`	99.7	100.0 / 100.0	Strict
`TkA05G425210`	`LXL04_021816`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Review
`TkA05G425270`	`LXL04_021817`	`JCVI_TKOH_00243`	99.7	100.0 / 100.0	Review
`TkA05G425350`	`LXL04_021819`	`JCVI_TKOH_00243`	91.6	100.0 / 100.0	Probable
`TkA05G425560`	`LXL04_021820`	`JCVI_TKOH_00243`	96.5	100.0 / 100.0	Strict
`TkA05G425640`	`LXL04_021821`	`JCVI_TKOH_00243`	96.8	100.0 / 100.0	Strict
`TkA05G425660`	`LXL04_021822`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G425800`	`LXL04_021824`	`JCVI_TKOH_00243`	96.4	100.0 / 100.0	Strict
`TkA05G426160`	`LXL04_021828`	`JCVI_TKOH_00243`	100.0	100.0 / 85.811	Strict
`TkA05G426260`	`LXL04_021814`	`JCVI_TKOH_00243`	78.7	100.0 / 100.0	Complex
`TkA05G426270`	`LXL04_021829`	`JCVI_TKOH_00243`	96.1	100.0 / 100.0	Complex
`TkA05G426340`	`LXL04_021830`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G427340`	`LXL04_021832`	`JCVI_TKOH_00243`	53.4	98.667 / 63.436	Complex
`TkA05G427970`	`LXL04_021833`	`JCVI_TKOH_00243`	98.8	100.0 / 100.0	Strict
`TkA05G428060`	`LXL04_021834`	`JCVI_TKOH_00243`	99.8	100.0 / 93.668	Strict
`TkA05G428540`	`LXL04_021837`	`JCVI_TKOH_00243`	99.8	100.0 / 100.0	Complex
`TkA05G428550`	`LXL04_021836`	`JCVI_TKOH_00243`	98.9	88.725 / 57.46	Review
`TkA05G428620`	`LXL04_021838`	`JCVI_TKOH_00243`	89.0	79.948 / 56.465	Review
`TkA05G428730`	`LXL04_021839`	`JCVI_TKOH_00243`	99.7	100.0 / 100.0	Strict
`TkA05G428780`	`LXL04_021840`	`JCVI_TKOH_00243`	91.7	100.0 / 89.441	Probable
`TkA05G428790`	`LXL04_021841`	`JCVI_TKOH_00243`	99.6	97.843 / 66.588	Complex
`TkA05G429030`	`LXL04_021843`	`JCVI_TKOH_00243`	100.0	100.0 / 100.0	Strict
`TkA05G429070`	`LXL04_021844`	`JCVI_TKOH_00243`	97.9	100.0 / 100.0	Complex
`TkA05G429100`	`LXL04_021845`	`JCVI_TKOH_00243`	98.9	100.0 / 100.0	Complex
`TkA05G429110`	`LXL04_021846`	`JCVI_TKOH_00243`	99.5	95.205 / 99.05	Complex
`TkA05G429130`	`LXL04_021847`	`JCVI_TKOH_00243`	100.0	100.0 / 36.923	Review