Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00312

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 40

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00312

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00312 Chr07 95438577-97247323 Chr06 108842459-110980414 mixed High 40 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00312`	Chr07:95438577-97247323	Chr06:108842459-110980414	mixed	40	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 40 · Showing 1–40 · Page 1/1

Download All Anchors TSV

TkA07G380780 → LXL04_030134

98.7%

TkA07G380800 → LXL04_030135

85.1%

TkA07G380810 → LXL04_030135

76.1%

TkA07G380820 → LXL04_030136

95.4%

TkA07G381060 → LXL04_030140

95.4%

TkA07G381440 → LXL04_030141

100.0%

TkA07G381490 → LXL04_030142

93.9%

TkA07G381550 → LXL04_030143

67.7%

TkA07G381560 → LXL04_030143

99.0%

TkA07G381680 → LXL04_030144

89.1%

TkA07G381720 → LXL04_030146

99.1%

TkA07G382660 → LXL04_030152

94.3%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA07G380780`	`LXL04_030134`	`JCVI_TKOH_00312`	98.7	100.0 / 98.551	Complex
`TkA07G380800`	`LXL04_030135`	`JCVI_TKOH_00312`	85.1	98.723 / 29.668	Complex
`TkA07G380810`	`LXL04_030135`	`JCVI_TKOH_00312`	76.1	99.604 / 42.008	Review
`TkA07G380820`	`LXL04_030136`	`JCVI_TKOH_00312`	95.4	100.0 / 100.0	Strict
`TkA07G381060`	`LXL04_030140`	`JCVI_TKOH_00312`	95.4	100.0 / 100.0	Strict
`TkA07G381440`	`LXL04_030141`	`JCVI_TKOH_00312`	100.0	100.0 / 100.0	Complex
`TkA07G381490`	`LXL04_030142`	`JCVI_TKOH_00312`	93.9	100.0 / 100.0	Probable
`TkA07G381550`	`LXL04_030143`	`JCVI_TKOH_00312`	67.7	96.124 / 45.091	Complex
`TkA07G381560`	`LXL04_030143`	`JCVI_TKOH_00312`	99.0	100.0 / 69.818	Review
`TkA07G381680`	`LXL04_030144`	`JCVI_TKOH_00312`	89.1	100.0 / 100.0	Review
`TkA07G381720`	`LXL04_030146`	`JCVI_TKOH_00312`	99.1	100.0 / 100.0	Strict
`TkA07G382660`	`LXL04_030152`	`JCVI_TKOH_00312`	94.3	100.0 / 100.0	Probable
`TkA07G382670`	`LXL04_030153`	`JCVI_TKOH_00312`	100.0	96.0 / 53.659	Review
`TkA07G383050`	`LXL04_030161`	`JCVI_TKOH_00312`	100.0	37.786 / 28.696	Review
`TkA07G383060`	`LXL04_030162`	`JCVI_TKOH_00312`	96.9	98.246 / 96.79	Complex
`TkA07G383340`	`LXL04_030167`	`JCVI_TKOH_00312`	99.2	100.0 / 100.0	Complex
`TkA07G383410`	`LXL04_030169`	`JCVI_TKOH_00312`	100.0	100.0 / 98.586	Strict
`TkA07G383750`	`LXL04_030170`	`JCVI_TKOH_00312`	100.0	100.0 / 100.0	Strict
`TkA07G383880`	`LXL04_030172`	`JCVI_TKOH_00312`	100.0	100.0 / 100.0	Strict
`TkA07G384220`	`LXL04_030173`	`JCVI_TKOH_00312`	100.0	100.0 / 72.159	Complex
`TkA07G384310`	`LXL04_030176`	`JCVI_TKOH_00312`	100.0	93.312 / 46.434	Review
`TkA07G384320`	`LXL04_030177`	`JCVI_TKOH_00312`	99.3	100.0 / 100.0	Strict
`TkA07G384330`	`LXL04_030178`	`JCVI_TKOH_00312`	99.3	100.0 / 100.0	Strict
`TkA07G384340`	`LXL04_030179`	`JCVI_TKOH_00312`	99.8	100.0 / 100.0	Strict
`TkA07G384350`	`LXL04_030180`	`JCVI_TKOH_00312`	99.1	100.0 / 100.0	Strict
`TkA07G384360`	`LXL04_030183`	`JCVI_TKOH_00312`	98.6	98.884 / 90.353	Strict
`TkA07G384400`	`LXL04_030184`	`JCVI_TKOH_00312`	90.8	94.631 / 22.329	Complex
`TkA07G384440`	`LXL04_030185`	`JCVI_TKOH_00312`	98.2	99.743 / 44.495	Review
`TkA07G385710`	`LXL04_030188`	`JCVI_TKOH_00312`	89.9	100.0 / 74.194	Review
`TkA07G385890`	`LXL04_030191`	`JCVI_TKOH_00312`	96.9	100.0 / 69.492	Review
`TkA07G385940`	`LXL04_030192`	`JCVI_TKOH_00312`	97.0	100.0 / 84.08	Strict
`TkA07G386130`	`LXL04_030196`	`JCVI_TKOH_00312`	96.5	100.0 / 100.0	Strict
`TkA07G386140`	`LXL04_030197`	`JCVI_TKOH_00312`	94.0	100.0 / 100.0	Probable
`TkA07G386620`	`LXL04_030200`	`JCVI_TKOH_00312`	98.6	100.0 / 80.077	Strict
`TkA07G386750`	`LXL04_030202`	`JCVI_TKOH_00312`	92.6	100.0 / 100.0	Probable
`TkA07G386760`	`LXL04_030203`	`JCVI_TKOH_00312`	99.4	100.0 / 88.481	Strict
`TkA07G387440`	`LXL04_030209`	`JCVI_TKOH_00312`	99.6	100.0 / 100.0	Strict
`TkA07G387480`	`LXL04_030210`	`JCVI_TKOH_00312`	99.9	100.0 / 100.0	Review
`TkA07G387500`	`LXL04_030211`	`JCVI_TKOH_00312`	96.7	61.0 / 31.282	Complex
`TkA07G387750`	`LXL04_030213`	`JCVI_TKOH_00312`	90.6	70.833 / 57.432	Complex