Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00141

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 69

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00141

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00141 Chr03 73471115-79846582 Chr02 109881891-115440657 mixed High 69 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00141`	Chr03:73471115-79846582	Chr02:109881891-115440657	mixed	69	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 69 · Showing 1–69 · Page 1/1

Download All Anchors TSV

TkA03G298770 → LXL04_008989

99.3%

TkA03G298880 → LXL04_008987

99.7%

TkA03G299050 → LXL04_008986

98.8%

TkA03G299340 → LXL04_008985

95.2%

TkA03G300300 → LXL04_008984

99.7%

TkA03G300580 → LXL04_008983

100.0%

TkA03G300720 → LXL04_008982

93.2%

TkA03G300890 → LXL04_008981

100.0%

TkA03G301440 → LXL04_008976

100.0%

TkA03G301450 → LXL04_008975

98.4%

TkA03G301520 → LXL04_008973

97.1%

TkA03G302230 → LXL04_008971

99.7%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA03G298770`	`LXL04_008989`	`JCVI_TKOH_00141`	99.3	100.0 / 100.0	Strict
`TkA03G298880`	`LXL04_008987`	`JCVI_TKOH_00141`	99.7	100.0 / 99.74	Strict
`TkA03G299050`	`LXL04_008986`	`JCVI_TKOH_00141`	98.8	76.261 / 63.614	Review
`TkA03G299340`	`LXL04_008985`	`JCVI_TKOH_00141`	95.2	93.333 / 69.136	Review
`TkA03G300300`	`LXL04_008984`	`JCVI_TKOH_00141`	99.7	100.0 / 100.0	Strict
`TkA03G300580`	`LXL04_008983`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Strict
`TkA03G300720`	`LXL04_008982`	`JCVI_TKOH_00141`	93.2	100.0 / 100.0	Complex
`TkA03G300890`	`LXL04_008981`	`JCVI_TKOH_00141`	100.0	93.75 / 91.413	Review
`TkA03G301440`	`LXL04_008976`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Strict
`TkA03G301450`	`LXL04_008975`	`JCVI_TKOH_00141`	98.4	95.669 / 67.127	Review
`TkA03G301520`	`LXL04_008973`	`JCVI_TKOH_00141`	97.1	100.0 / 100.0	Strict
`TkA03G302230`	`LXL04_008971`	`JCVI_TKOH_00141`	99.7	100.0 / 100.0	Strict
`TkA03G303080`	`LXL04_008967`	`JCVI_TKOH_00141`	99.3	85.89 / 82.353	Strict
`TkA03G303630`	`LXL04_008966`	`JCVI_TKOH_00141`	96.2	84.211 / 15.693	Review
`TkA03G303820`	`LXL04_008964`	`JCVI_TKOH_00141`	92.7	81.25 / 60.0	Complex
`TkA03G304470`	`LXL04_008961`	`JCVI_TKOH_00141`	96.4	100.0 / 100.0	Strict
`TkA03G304660`	`LXL04_008955`	`JCVI_TKOH_00141`	90.7	98.714 / 96.308	Probable
`TkA03G304990`	`LXL04_008954`	`JCVI_TKOH_00141`	98.4	88.693 / 63.544	Complex
`TkA03G305710`	`LXL04_008949`	`JCVI_TKOH_00141`	98.1	100.0 / 100.0	Strict
`TkA03G305740`	`LXL04_008947`	`JCVI_TKOH_00141`	96.2	99.594 / 97.624	Strict
`TkA03G306170`	`LXL04_008946`	`JCVI_TKOH_00141`	68.4	100.0 / 100.0	Review
`TkA03G306980`	`LXL04_008942`	`JCVI_TKOH_00141`	93.8	99.222 / 100.0	Probable
`TkA03G307210`	`LXL04_008940`	`JCVI_TKOH_00141`	99.6	100.0 / 100.0	Strict
`TkA03G307920`	`LXL04_008936`	`JCVI_TKOH_00141`	100.0	100.0 / 92.652	Complex
`TkA03G307990`	`LXL04_008935`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Complex
`TkA03G308520`	`LXL04_008934`	`JCVI_TKOH_00141`	97.6	100.0 / 100.0	Strict
`TkA03G308950`	`LXL04_008931`	`JCVI_TKOH_00141`	94.6	100.0 / 87.179	Complex
`TkA03G309490`	`LXL04_008929`	`JCVI_TKOH_00141`	99.7	100.0 / 100.0	Complex
`TkA03G310270`	`LXL04_008927`	`JCVI_TKOH_00141`	96.9	100.0 / 90.521	Strict
`TkA03G310280`	`LXL04_008926`	`JCVI_TKOH_00141`	98.9	100.0 / 100.0	Strict
`TkA03G311270`	`LXL04_008918`	`JCVI_TKOH_00141`	91.1	100.0 / 100.0	Probable
`TkA03G311280`	`LXL04_008917`	`JCVI_TKOH_00141`	93.3	84.181 / 23.065	Complex
`TkA03G312080`	`LXL04_008914`	`JCVI_TKOH_00141`	72.9	100.0 / 100.0	Review
`TkA03G312390`	`LXL04_008913`	`JCVI_TKOH_00141`	97.2	96.565 / 100.0	Strict
`TkA03G313680`	`LXL04_008910`	`JCVI_TKOH_00141`	100.0	93.0 / 100.0	Strict
`TkA03G314810`	`LXL04_008903`	`JCVI_TKOH_00141`	95.7	100.0 / 100.0	Strict
`TkA03G314860`	`LXL04_008901`	`JCVI_TKOH_00141`	98.0	100.0 / 100.0	Strict
`TkA03G315060`	`LXL04_008895`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Strict
`TkA03G315230`	`LXL04_008894`	`JCVI_TKOH_00141`	99.0	100.0 / 100.0	Strict
`TkA03G315460`	`LXL04_008893`	`JCVI_TKOH_00141`	99.2	100.0 / 100.0	Complex
`TkA03G315480`	`LXL04_008891`	`JCVI_TKOH_00141`	99.3	100.0 / 100.0	Strict
`TkA03G316940`	`LXL04_008886`	`JCVI_TKOH_00141`	97.8	88.298 / 49.82	Review
`TkA03G317560`	`LXL04_008881`	`JCVI_TKOH_00141`	92.2	100.0 / 100.0	Probable
`TkA03G317620`	`LXL04_008880`	`JCVI_TKOH_00141`	98.8	98.246 / 100.0	Strict
`TkA03G317730`	`LXL04_008879`	`JCVI_TKOH_00141`	95.0	91.935 / 91.255	Strict
`TkA03G318240`	`LXL04_008875`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Strict
`TkA03G318510`	`LXL04_008871`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Complex
`TkA03G319070`	`LXL04_008865`	`JCVI_TKOH_00141`	94.2	88.043 / 23.013	Complex
`TkA03G319240`	`LXL04_008861`	`JCVI_TKOH_00141`	99.6	100.0 / 100.0	Strict
`TkA03G319250`	`LXL04_008860`	`JCVI_TKOH_00141`	99.2	100.0 / 100.0	Complex
`TkA03G319550`	`LXL04_008859`	`JCVI_TKOH_00141`	98.5	100.0 / 100.0	Strict
`TkA03G319980`	`LXL04_008867`	`JCVI_TKOH_00141`	98.3	94.309 / 16.984	Review
`TkA03G319990`	`LXL04_008867`	`JCVI_TKOH_00141`	97.8	97.425 / 33.236	Review
`TkA03G320000`	`LXL04_008867`	`JCVI_TKOH_00141`	97.2	100.0 / 20.937	Review
`TkA03G320230`	`LXL04_008865`	`JCVI_TKOH_00141`	91.3	90.431 / 25.384	Complex
`TkA03G320240`	`LXL04_008864`	`JCVI_TKOH_00141`	100.0	93.789 / 96.795	Strict
`TkA03G320330`	`LXL04_008854`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Complex
`TkA03G320550`	`LXL04_008850`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Review
`TkA03G321330`	`LXL04_008843`	`JCVI_TKOH_00141`	99.7	100.0 / 100.0	Strict
`TkA03G321380`	`LXL04_008842`	`JCVI_TKOH_00141`	99.1	100.0 / 100.0	Strict
`TkA03G321550`	`LXL04_008856`	`JCVI_TKOH_00141`	99.4	100.0 / 100.0	Review
`TkA03G321610`	`LXL04_008854`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Complex
`TkA03G321900`	`LXL04_008853`	`JCVI_TKOH_00141`	100.0	100.0 / 100.0	Review
`TkA03G322630`	`LXL04_008837`	`JCVI_TKOH_00141`	100.0	100.0 / 61.233	Complex
`TkA03G324360`	`LXL04_008836`	`JCVI_TKOH_00141`	99.1	100.0 / 100.0	Strict
`TkA03G324370`	`LXL04_008835`	`JCVI_TKOH_00141`	98.8	96.718 / 60.0	Review
`TkA03G324380`	`LXL04_008834`	`JCVI_TKOH_00141`	99.2	100.0 / 100.0	Strict
`TkA03G324560`	`LXL04_008832`	`JCVI_TKOH_00141`	99.7	99.707 / 28.632	Review
`TkA03G325090`	`LXL04_008831`	`JCVI_TKOH_00141`	97.7	100.0 / 100.0	Strict