RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00125
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 38
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00125

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00125 Chr03 13281968-17066803 Chr02 21331031-23821201 mixed High 38 anchors
Chr03 13281968-17066803 Chr02 21331031-23821201 JCVI_TKOH_00125 · 38 gene pairs TkA03G050460 | LXL04_006662 | 48.7% | multi_candidate_from_TK1151 | Complex TkA03G055660 | LXL04_006664 | 99.5% | RBH_high_identity_coverage_synteny | Strict TkA03G056330 | LXL04_006667 | 99.1% | RBH_high_identity_coverage_synteny | Strict TkA03G057410 | LXL04_006672 | 87.4% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA03G057630 | LXL04_006680 | 51.5% | multi_source_to_OH1004 | Complex TkA03G057790 | LXL04_006680 | 50.0% | multi_source_to_OH1004 | Complex TkA03G057910 | LXL04_006680 | 91.7% | multi_source_to_OH1004 | Complex TkA03G058000 | LXL04_006685 | 97.2% | RBH_sequence_supported | Probable TkA03G058090 | LXL04_006690 | 91.6% | RBH_sequence_supported | Probable TkA03G058100 | LXL04_006692 | 100.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA03G058220 | LXL04_006694 | 99.0% | multi_source_to_OH1004 | Complex TkA03G058440 | LXL04_006696 | 95.6% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00125 Chr03:13281968-17066803 Chr02:21331031-23821201 mixed 38 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 38 · Showing 1–38 · Page 1/1

Download All Anchors TSV
TkA03G050460 → LXL04_006662
48.7%
TkA03G055660 → LXL04_006664
99.5%
TkA03G056330 → LXL04_006667
99.1%
TkA03G057410 → LXL04_006672
87.4%
TkA03G057630 → LXL04_006680
51.5%
TkA03G057790 → LXL04_006680
50.0%
TkA03G057910 → LXL04_006680
91.7%
TkA03G058000 → LXL04_006685
97.2%
TkA03G058090 → LXL04_006690
91.6%
TkA03G058100 → LXL04_006692
100.0%
TkA03G058220 → LXL04_006694
99.0%
TkA03G058440 → LXL04_006696
95.6%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA03G050460LXL04_006662JCVI_TKOH_0012548.795.148 / 99.787Complex
TkA03G055660LXL04_006664JCVI_TKOH_0012599.5100.0 / 100.0Strict
TkA03G056330LXL04_006667JCVI_TKOH_0012599.194.783 / 95.197Strict
TkA03G057410LXL04_006672JCVI_TKOH_0012587.4100.0 / 96.388Review
TkA03G057630LXL04_006680JCVI_TKOH_0012551.598.387 / 96.602Complex
TkA03G057790LXL04_006680JCVI_TKOH_0012550.098.438 / 96.602Complex
TkA03G057910LXL04_006680JCVI_TKOH_0012591.759.717 / 87.864Complex
TkA03G058000LXL04_006685JCVI_TKOH_0012597.274.825 / 100.0Probable
TkA03G058090LXL04_006690JCVI_TKOH_0012591.6100.0 / 83.972Probable
TkA03G058100LXL04_006692JCVI_TKOH_00125100.0100.0 / 100.0Review
TkA03G058220LXL04_006694JCVI_TKOH_0012599.098.477 / 76.529Complex
TkA03G058440LXL04_006696JCVI_TKOH_0012595.6100.0 / 79.798Complex
TkA03G058910LXL04_006697JCVI_TKOH_0012594.5100.0 / 100.0Complex
TkA03G059080LXL04_006698JCVI_TKOH_0012598.896.721 / 87.526Review
TkA03G059110LXL04_006699JCVI_TKOH_0012577.289.516 / 97.926Review
TkA03G059600LXL04_006703JCVI_TKOH_0012599.6100.0 / 100.0Complex
TkA03G059820LXL04_006708JCVI_TKOH_0012599.5100.0 / 100.0Complex
TkA03G059830LXL04_006709JCVI_TKOH_0012599.2100.0 / 100.0Review
TkA03G060000LXL04_006712JCVI_TKOH_0012599.2100.0 / 100.0Complex
TkA03G061010LXL04_006716JCVI_TKOH_0012596.581.377 / 36.347Complex
TkA03G061020LXL04_006717JCVI_TKOH_0012599.7100.0 / 100.0Complex
TkA03G061090LXL04_006718JCVI_TKOH_0012597.7100.0 / 100.0Review
TkA03G062740LXL04_006717JCVI_TKOH_00125100.0100.0 / 100.0Complex
TkA03G062750LXL04_006718JCVI_TKOH_0012599.0100.0 / 100.0Review
TkA03G062820LXL04_006719JCVI_TKOH_0012579.1100.0 / 100.0Review
TkA03G062930LXL04_006722JCVI_TKOH_0012599.277.713 / 88.629Probable
TkA03G064140LXL04_006726JCVI_TKOH_00125100.0100.0 / 100.0Complex
TkA03G064740LXL04_006728JCVI_TKOH_0012595.7100.0 / 100.0Review
TkA03G064930LXL04_006731JCVI_TKOH_0012577.897.674 / 23.633Complex
TkA03G064940LXL04_006731JCVI_TKOH_0012558.0100.0 / 89.258Complex
TkA03G065130LXL04_006732JCVI_TKOH_0012593.977.586 / 98.361Complex
TkA03G065470LXL04_006734JCVI_TKOH_00125100.0100.0 / 56.433Review
TkA03G065750LXL04_006735JCVI_TKOH_0012593.173.913 / 100.0Complex
TkA03G066090LXL04_006738JCVI_TKOH_00125100.098.039 / 25.063Review
TkA03G066170LXL04_006738JCVI_TKOH_00125100.040.741 / 11.028Complex
TkA03G066190LXL04_006739JCVI_TKOH_0012599.095.781 / 78.645Complex
TkA03G066220LXL04_006740JCVI_TKOH_0012598.2100.0 / 100.0Complex
TkA03G066230LXL04_006741JCVI_TKOH_0012599.4100.0 / 100.0Complex