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Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00147
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 1292
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00147

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00147 Chr03 114459386-157381471 Chr02 130535972-171456523 mixed High 92 anchors
Chr03 114459386-157381471 Chr02 130535972-171456523 JCVI_TKOH_00147 · 1292 gene pairs TkA03G605020 | LXL04_011605 | 92.6% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA03G605140 | LXL04_011606 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA03G605250 | LXL04_011610 | 99.1% | RBH_high_identity_coverage_synteny | Strict TkA03G605380 | LXL04_011611 | 91.0% | RBH_sequence_supported | Probable TkA03G605460 | LXL04_011612 | 99.4% | RBH_high_identity_coverage_synteny | Strict TkA03G605930 | LXL04_011615 | 88.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA03G605980 | LXL04_011617 | 99.5% | multi_source_to_OH1004 | Complex TkA03G606170 | LXL04_011620 | 93.3% | non_reciprocal_best_hit | Complex TkA03G606530 | LXL04_011622 | 99.5% | RBH_high_identity_coverage_synteny | Strict TkA03G606570 | LXL04_011623 | 83.9% | non_reciprocal_best_hit | Complex TkA03G606580 | LXL04_011624 | 99.7% | RBH_high_identity_coverage_synteny | Strict TkA03G606590 | LXL04_011625 | 95.9% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00147 Chr03:114459386-157381471 Chr02:130535972-171456523 mixed 1292 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 1292 · Showing 1201–1292 · Page 7/7

Previous Download All Anchors TSV
TkA03G605020 → LXL04_011605
92.6%
TkA03G605140 → LXL04_011606
100.0%
TkA03G605250 → LXL04_011610
99.1%
TkA03G605380 → LXL04_011611
91.0%
TkA03G605460 → LXL04_011612
99.4%
TkA03G605930 → LXL04_011615
88.0%
TkA03G605980 → LXL04_011617
99.5%
TkA03G606170 → LXL04_011620
93.3%
TkA03G606530 → LXL04_011622
99.5%
TkA03G606570 → LXL04_011623
83.9%
TkA03G606580 → LXL04_011624
99.7%
TkA03G606590 → LXL04_011625
95.9%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA03G605020LXL04_011605JCVI_TKOH_0014792.6100.0 / 100.0Review
TkA03G605140LXL04_011606JCVI_TKOH_00147100.0100.0 / 80.606Strict
TkA03G605250LXL04_011610JCVI_TKOH_0014799.1100.0 / 100.0Strict
TkA03G605380LXL04_011611JCVI_TKOH_0014791.0100.0 / 100.0Probable
TkA03G605460LXL04_011612JCVI_TKOH_0014799.4100.0 / 100.0Strict
TkA03G605930LXL04_011615JCVI_TKOH_0014788.089.109 / 88.789Review
TkA03G605980LXL04_011617JCVI_TKOH_0014799.598.4 / 94.915Complex
TkA03G606170LXL04_011620JCVI_TKOH_0014793.354.167 / 23.908Complex
TkA03G606530LXL04_011622JCVI_TKOH_0014799.5100.0 / 100.0Strict
TkA03G606570LXL04_011623JCVI_TKOH_0014783.956.4 / 82.184Complex
TkA03G606580LXL04_011624JCVI_TKOH_0014799.7100.0 / 93.86Strict
TkA03G606590LXL04_011625JCVI_TKOH_0014795.9100.0 / 100.0Complex
TkA03G606690LXL04_011626JCVI_TKOH_0014799.5100.0 / 100.0Strict
TkA03G606960LXL04_011628JCVI_TKOH_0014778.6100.0 / 65.01Complex
TkA03G606970LXL04_011629JCVI_TKOH_0014799.8100.0 / 99.805Strict
TkA03G606980LXL04_011630JCVI_TKOH_0014799.796.328 / 89.737Strict
TkA03G607120LXL04_011631JCVI_TKOH_0014799.3100.0 / 100.0Strict
TkA03G607130LXL04_011632JCVI_TKOH_0014799.0100.0 / 100.0Review
TkA03G607160LXL04_011633JCVI_TKOH_0014796.796.835 / 79.688Complex
TkA03G607240LXL04_011634JCVI_TKOH_0014797.8100.0 / 100.0Complex
TkA03G607380LXL04_011637JCVI_TKOH_0014799.8100.0 / 81.924Strict
TkA03G607480LXL04_011639JCVI_TKOH_0014799.898.965 / 59.305Review
TkA03G607600LXL04_011640JCVI_TKOH_0014799.196.311 / 30.639Review
TkA03G608340LXL04_011644JCVI_TKOH_00147100.0100.0 / 100.0Strict
TkA03G608350LXL04_011645JCVI_TKOH_0014767.679.91 / 84.694Review
TkA03G608380LXL04_011646JCVI_TKOH_0014799.8100.0 / 100.0Review
TkA03G608590LXL04_011647JCVI_TKOH_0014798.9100.0 / 100.0Strict
TkA03G608620LXL04_011649JCVI_TKOH_00147100.0100.0 / 100.0Complex
TkA03G608700LXL04_011649JCVI_TKOH_0014756.298.382 / 93.438Complex
TkA03G608710LXL04_011650JCVI_TKOH_0014792.8100.0 / 100.0Probable
TkA03G609160LXL04_011654JCVI_TKOH_00147100.0100.0 / 8.416Review
TkA03G609170LXL04_011654JCVI_TKOH_0014796.299.701 / 56.436Review
TkA03G609250LXL04_011657JCVI_TKOH_0014799.175.227 / 100.0Review
TkA03G609290LXL04_011659JCVI_TKOH_0014793.890.355 / 26.176Complex
TkA03G609310LXL04_011658JCVI_TKOH_0014786.1100.0 / 100.0Complex
TkA03G609350LXL04_011659JCVI_TKOH_0014797.5100.0 / 100.0Complex
TkA03G609380LXL04_011660JCVI_TKOH_0014789.258.491 / 33.854Complex
TkA03G609400LXL04_011661JCVI_TKOH_0014799.396.265 / 57.637Review
TkA03G609410LXL04_011662JCVI_TKOH_0014798.8100.0 / 100.0Strict
TkA03G609420LXL04_011663JCVI_TKOH_00147100.0100.0 / 100.0Complex
TkA03G609590LXL04_011664JCVI_TKOH_00147100.0100.0 / 100.0Complex
TkA03G609610LXL04_011665JCVI_TKOH_0014799.1100.0 / 100.0Complex
TkA03G609660LXL04_011666JCVI_TKOH_0014799.4100.0 / 54.421Review
TkA03G609830LXL04_011671JCVI_TKOH_0014790.8100.0 / 100.0Review
TkA03G609840LXL04_011675JCVI_TKOH_0014798.497.71 / 49.225Review
TkA03G609940LXL04_011671JCVI_TKOH_0014786.9100.0 / 100.0Complex
TkA03G610200LXL04_011679JCVI_TKOH_0014799.8100.0 / 100.0Strict
TkA03G610210LXL04_011680JCVI_TKOH_0014790.996.452 / 48.105Review
TkA03G610220LXL04_011681JCVI_TKOH_00147100.0100.0 / 100.0Review
TkA03G610240LXL04_011682JCVI_TKOH_0014799.1100.0 / 70.323Probable
TkA03G610390LXL04_011685JCVI_TKOH_0014799.8100.0 / 100.0Strict
TkA03G610400LXL04_011686JCVI_TKOH_00147100.0100.0 / 100.0Complex
TkA03G610520LXL04_011688JCVI_TKOH_0014796.178.283 / 73.43Probable
TkA03G612580LXL04_011707JCVI_TKOH_0014796.760.0 / 33.708Review
TkA03G612640LXL04_011708JCVI_TKOH_0014798.8100.0 / 94.913Strict
TkA03G612710LXL04_011709JCVI_TKOH_0014799.2100.0 / 43.243Review
TkA03G612720LXL04_011710JCVI_TKOH_0014798.1100.0 / 83.333Strict
TkA03G612850LXL04_011711JCVI_TKOH_0014790.5100.0 / 100.0Probable
TkA03G613670LXL04_011714JCVI_TKOH_00147100.0100.0 / 100.0Strict
TkA03G614250LXL04_011718JCVI_TKOH_0014799.0100.0 / 100.0Strict
TkA03G614900LXL04_011723JCVI_TKOH_0014799.6100.0 / 100.0Review
TkA03G614930LXL04_011725JCVI_TKOH_00147100.0100.0 / 100.0Strict
TkA03G614990LXL04_011726JCVI_TKOH_0014799.499.035 / 44.898Review
TkA03G615000LXL04_011727JCVI_TKOH_0014799.9100.0 / 100.0Strict
TkA03G615060LXL04_011729JCVI_TKOH_0014798.198.086 / 68.771Review
TkA03G615070LXL04_011730JCVI_TKOH_0014798.9100.0 / 72.959Probable
TkA03G615090LXL04_011732JCVI_TKOH_0014798.698.196 / 71.0Probable
TkA03G615150LXL04_011733JCVI_TKOH_0014796.670.659 / 61.622Review
TkA03G615240LXL04_011735JCVI_TKOH_0014797.995.238 / 58.733Review
TkA03G615250LXL04_011736JCVI_TKOH_0014789.090.099 / 25.0Complex
TkA03G616090LXL04_011743JCVI_TKOH_0014798.6100.0 / 92.275Complex
TkA03G616180LXL04_011745JCVI_TKOH_0014793.2100.0 / 100.0Complex
TkA03G616740LXL04_011748JCVI_TKOH_00147100.0100.0 / 100.0Strict
TkA03G617330LXL04_011751JCVI_TKOH_0014796.6100.0 / 77.128Probable
TkA03G617340LXL04_011752JCVI_TKOH_0014799.6100.0 / 56.473Review
TkA03G617640LXL04_011764JCVI_TKOH_0014798.499.312 / 48.652Review
TkA03G617970LXL04_011759JCVI_TKOH_0014799.6100.0 / 69.597Complex
TkA03G617980LXL04_011757JCVI_TKOH_0014799.4100.0 / 100.0Review
TkA03G618050LXL04_011767JCVI_TKOH_00147100.0100.0 / 95.0Review
TkA03G618060LXL04_011768JCVI_TKOH_0014797.1100.0 / 100.0Complex
TkA03G618150LXL04_011755JCVI_TKOH_0014796.5100.0 / 100.0Strict
TkA03G618220LXL04_011757JCVI_TKOH_0014798.7100.0 / 100.0Review
TkA03G618230LXL04_011758JCVI_TKOH_0014797.899.565 / 67.164Review
TkA03G618240LXL04_011759JCVI_TKOH_0014795.891.944 / 94.669Complex
TkA03G618440LXL04_011764JCVI_TKOH_0014797.3100.0 / 100.0Strict
TkA03G618490LXL04_011766JCVI_TKOH_0014799.499.371 / 27.336Review
TkA03G618520LXL04_011766JCVI_TKOH_0014798.397.814 / 30.969Review
TkA03G618540LXL04_011767JCVI_TKOH_00147100.0100.0 / 95.0Review
TkA03G618550LXL04_011768JCVI_TKOH_0014796.892.988 / 96.172Complex
TkA03G618690LXL04_011769JCVI_TKOH_0014797.8100.0 / 100.0Review
TkA03G619070LXL04_011770JCVI_TKOH_0014785.975.54 / 94.149Complex
TkA03G619130LXL04_011770JCVI_TKOH_0014785.975.54 / 94.149Complex