Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00036
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 714
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00036

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00036 Chr01 123381654-146487023 Chr01 15246434-38351657 mixed High 200 anchors
Chr01 123381654-146487023 Chr01 15246434-38351657 JCVI_TKOH_00036 · 714 gene pairs TkA01G519910 | LXL04_001671 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA01G519920 | LXL04_001670 | 99.6% | RBH_high_identity_coverage_synteny | Strict TkA01G519940 | LXL04_001669 | 99.2% | RBH_high_identity_coverage_synteny | Strict TkA01G520160 | LXL04_001662 | 97.2% | RBH_sequence_supported | Probable TkA01G520190 | LXL04_001660 | 98.2% | sequence_supported_annotation_or_model_conflict | Review TkA01G520230 | LXL04_001659 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA01G520240 | LXL04_001658 | 99.6% | sequence_supported_annotation_or_model_conflict | Review TkA01G520270 | LXL04_001658 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA01G520290 | LXL04_001654 | 97.3% | multi_source_to_OH1004 | Complex TkA01G520300 | LXL04_001653 | 99.1% | sequence_supported_annotation_or_model_conflict | Review TkA01G520310 | LXL04_001652 | 96.0% | RBH_high_identity_coverage_synteny | Strict TkA01G520320 | LXL04_001651 | 99.2% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00036 Chr01:123381654-146487023 Chr01:15246434-38351657 mixed 714 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 714 · Showing 201–400 · Page 2/4

TkA01G519910 → LXL04_001671
100.0%
TkA01G519920 → LXL04_001670
99.6%
TkA01G519940 → LXL04_001669
99.2%
TkA01G520160 → LXL04_001662
97.2%
TkA01G520190 → LXL04_001660
98.2%
TkA01G520230 → LXL04_001659
100.0%
TkA01G520240 → LXL04_001658
99.6%
TkA01G520270 → LXL04_001658
100.0%
TkA01G520290 → LXL04_001654
97.3%
TkA01G520300 → LXL04_001653
99.1%
TkA01G520310 → LXL04_001652
96.0%
TkA01G520320 → LXL04_001651
99.2%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA01G519910LXL04_001671JCVI_TKOH_00036100.0100.0 / 90.351Review
TkA01G519920LXL04_001670JCVI_TKOH_0003699.6100.0 / 100.0Strict
TkA01G519940LXL04_001669JCVI_TKOH_0003699.2100.0 / 100.0Strict
TkA01G520160LXL04_001662JCVI_TKOH_0003697.299.469 / 76.273Probable
TkA01G520190LXL04_001660JCVI_TKOH_0003698.256.918 / 90.503Review
TkA01G520230LXL04_001659JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G520240LXL04_001658JCVI_TKOH_0003699.690.816 / 37.765Review
TkA01G520270LXL04_001658JCVI_TKOH_00036100.0100.0 / 52.192Review
TkA01G520290LXL04_001654JCVI_TKOH_0003697.3100.0 / 100.0Complex
TkA01G520300LXL04_001653JCVI_TKOH_0003699.1100.0 / 46.835Review
TkA01G520310LXL04_001652JCVI_TKOH_0003696.087.595 / 83.491Strict
TkA01G520320LXL04_001651JCVI_TKOH_0003699.2100.0 / 100.0Strict
TkA01G520570LXL04_001649JCVI_TKOH_0003698.4100.0 / 100.0Strict
TkA01G520610LXL04_001648JCVI_TKOH_0003699.7100.0 / 100.0Strict
TkA01G520620LXL04_001647JCVI_TKOH_0003699.6100.0 / 100.0Strict
TkA01G520640LXL04_001645JCVI_TKOH_0003689.397.329 / 100.0Review
TkA01G520650LXL04_001644JCVI_TKOH_0003697.999.167 / 92.885Strict
TkA01G520710LXL04_001640JCVI_TKOH_0003695.2100.0 / 100.0Strict
TkA01G520730LXL04_001639JCVI_TKOH_00036100.0100.0 / 99.165Strict
TkA01G520780LXL04_001638JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G520790LXL04_001636JCVI_TKOH_0003697.8100.0 / 100.0Strict
TkA01G520970LXL04_001635JCVI_TKOH_0003699.699.371 / 100.0Strict
TkA01G521110LXL04_001634JCVI_TKOH_0003694.7100.0 / 100.0Complex
TkA01G521120LXL04_001633JCVI_TKOH_00036100.099.18 / 27.314Review
TkA01G521140LXL04_001632JCVI_TKOH_0003698.2100.0 / 100.0Strict
TkA01G521160LXL04_001631JCVI_TKOH_00036100.096.226 / 84.53Strict
TkA01G521270LXL04_001628JCVI_TKOH_0003696.3100.0 / 100.0Strict
TkA01G521280LXL04_001627JCVI_TKOH_00036100.0100.0 / 75.41Probable
TkA01G521500LXL04_001626JCVI_TKOH_0003688.7100.0 / 91.571Review
TkA01G521540LXL04_001625JCVI_TKOH_0003699.796.25 / 65.672Complex
TkA01G521810LXL04_001618JCVI_TKOH_0003698.6100.0 / 100.0Strict
TkA01G521820LXL04_001617JCVI_TKOH_0003699.7100.0 / 98.465Strict
TkA01G521840LXL04_001616JCVI_TKOH_0003699.5100.0 / 98.405Complex
TkA01G521990LXL04_001615JCVI_TKOH_0003688.4100.0 / 100.0Review
TkA01G522070LXL04_001612JCVI_TKOH_0003697.1100.0 / 100.0Strict
TkA01G522650LXL04_001606JCVI_TKOH_00036100.0100.0 / 41.964Review
TkA01G522780LXL04_001605JCVI_TKOH_00036100.090.511 / 50.0Review
TkA01G522830LXL04_001602JCVI_TKOH_0003698.196.273 / 37.26Review
TkA01G522920LXL04_001599JCVI_TKOH_0003699.6100.0 / 100.0Strict
TkA01G522970LXL04_001598JCVI_TKOH_0003698.7100.0 / 94.36Strict
TkA01G523070LXL04_001595JCVI_TKOH_0003699.7100.0 / 100.0Complex
TkA01G523130LXL04_001590JCVI_TKOH_0003675.9100.0 / 72.557Complex
TkA01G523300LXL04_001590JCVI_TKOH_0003691.0100.0 / 75.26Complex
TkA01G523680LXL04_001588JCVI_TKOH_0003642.994.194 / 32.96Complex
TkA01G523880LXL04_001588JCVI_TKOH_0003689.2100.0 / 85.426Review
TkA01G523990LXL04_001586JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G524040LXL04_001585JCVI_TKOH_0003699.5100.0 / 100.0Strict
TkA01G524300LXL04_001581JCVI_TKOH_00036100.094.96 / 94.459Complex
TkA01G524320LXL04_001580JCVI_TKOH_0003680.7100.0 / 100.0Review
TkA01G524360LXL04_001578JCVI_TKOH_0003699.8100.0 / 100.0Complex
TkA01G524640LXL04_001576JCVI_TKOH_0003699.6100.0 / 100.0Strict
TkA01G524650LXL04_001575JCVI_TKOH_0003699.4100.0 / 100.0Complex
TkA01G524980LXL04_001569JCVI_TKOH_0003699.6100.0 / 100.0Strict
TkA01G524990LXL04_001568JCVI_TKOH_0003699.5100.0 / 100.0Complex
TkA01G525310LXL04_001565JCVI_TKOH_0003699.2100.0 / 100.0Strict
TkA01G525340LXL04_001563JCVI_TKOH_0003692.299.138 / 99.539Complex
TkA01G525420LXL04_001561JCVI_TKOH_0003695.3100.0 / 100.0Review
TkA01G525810LXL04_001558JCVI_TKOH_0003687.790.086 / 51.087Complex
TkA01G526360LXL04_001556JCVI_TKOH_0003697.592.386 / 70.955Complex
TkA01G526400LXL04_001550JCVI_TKOH_00036100.0100.0 / 97.494Strict
TkA01G526530LXL04_001548JCVI_TKOH_00036100.0100.0 / 94.737Strict
TkA01G526690LXL04_001546JCVI_TKOH_0003699.1100.0 / 100.0Strict
TkA01G526800LXL04_001545JCVI_TKOH_0003699.7100.0 / 100.0Strict
TkA01G526820LXL04_001544JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G526830LXL04_001543JCVI_TKOH_0003699.5100.0 / 67.325Review
TkA01G526940LXL04_001542JCVI_TKOH_0003699.7100.0 / 100.0Strict
TkA01G526960LXL04_001541JCVI_TKOH_0003697.6100.0 / 100.0Review
TkA01G528050LXL04_001535JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G528100LXL04_001534JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G528130LXL04_001532JCVI_TKOH_0003698.299.119 / 80.0Strict
TkA01G528390LXL04_001529JCVI_TKOH_0003686.958.192 / 69.032Complex
TkA01G528450LXL04_001529JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G528470LXL04_001528JCVI_TKOH_0003698.460.194 / 20.328Complex
TkA01G528640LXL04_001527JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G528680LXL04_001526JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G528690LXL04_001525JCVI_TKOH_0003698.3100.0 / 100.0Review
TkA01G528710LXL04_001524JCVI_TKOH_0003699.0100.0 / 100.0Complex
TkA01G528720LXL04_001520JCVI_TKOH_0003697.385.38 / 30.932Review
TkA01G528730LXL04_001519JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G528850LXL04_001517JCVI_TKOH_0003697.7100.0 / 100.0Strict
TkA01G528870LXL04_001515JCVI_TKOH_0003696.981.328 / 62.903Complex
TkA01G528880LXL04_001515JCVI_TKOH_0003697.3100.0 / 35.806Review
TkA01G528930LXL04_001513JCVI_TKOH_0003695.2100.0 / 100.0Strict
TkA01G528980LXL04_001512JCVI_TKOH_0003695.0100.0 / 100.0Review
TkA01G529480LXL04_001511JCVI_TKOH_0003698.9100.0 / 100.0Complex
TkA01G529810LXL04_001508JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G529870LXL04_001507JCVI_TKOH_0003692.9100.0 / 100.0Probable
TkA01G530340LXL04_001503JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G530450LXL04_001502JCVI_TKOH_0003699.3100.0 / 100.0Strict
TkA01G530460LXL04_001501JCVI_TKOH_0003699.6100.0 / 46.095Review
TkA01G530600LXL04_001499JCVI_TKOH_0003698.8100.0 / 100.0Strict
TkA01G531330LXL04_001497JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G531370LXL04_001496JCVI_TKOH_0003676.597.03 / 74.194Review
TkA01G531400LXL04_001493JCVI_TKOH_0003668.515.254 / 19.014Complex
TkA01G531430LXL04_001493JCVI_TKOH_0003699.498.204 / 57.746Review
TkA01G531860LXL04_001490JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G532020LXL04_001490JCVI_TKOH_0003684.997.436 / 67.556Complex
TkA01G532050LXL04_001488JCVI_TKOH_00036100.095.652 / 100.0Strict
TkA01G532060LXL04_001486JCVI_TKOH_00036100.0100.0 / 75.595Probable
TkA01G532130LXL04_001485JCVI_TKOH_0003649.4100.0 / 100.0Review
TkA01G532370LXL04_001480JCVI_TKOH_0003697.847.849 / 13.404Complex
TkA01G532580LXL04_001478JCVI_TKOH_00036100.095.327 / 82.703Strict
TkA01G532590LXL04_001477JCVI_TKOH_0003699.8100.0 / 100.0Strict
TkA01G532610LXL04_001476JCVI_TKOH_0003699.9100.0 / 100.0Review
TkA01G532620LXL04_001475JCVI_TKOH_0003699.7100.0 / 58.814Review
TkA01G532630LXL04_001474JCVI_TKOH_00036100.063.975 / 100.0Review
TkA01G532700LXL04_001472JCVI_TKOH_0003699.7100.0 / 37.066Review
TkA01G532730LXL04_001472JCVI_TKOH_00036100.099.821 / 62.486Review
TkA01G533040LXL04_001470JCVI_TKOH_00036100.0100.0 / 29.949Review
TkA01G533320LXL04_001469JCVI_TKOH_0003699.489.171 / 98.689Complex
TkA01G533360LXL04_001469JCVI_TKOH_0003667.291.981 / 36.142Complex
TkA01G533390LXL04_001468JCVI_TKOH_0003699.3100.0 / 97.381Strict
TkA01G533400LXL04_001467JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G533450LXL04_001466JCVI_TKOH_0003699.2100.0 / 84.615Complex
TkA01G533530LXL04_001464JCVI_TKOH_0003666.799.587 / 100.0Complex
TkA01G533540LXL04_001465JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G533640LXL04_001464JCVI_TKOH_0003696.9100.0 / 69.928Complex
TkA01G533790LXL04_001462JCVI_TKOH_0003699.3100.0 / 100.0Strict
TkA01G533800LXL04_001461JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G533870LXL04_001460JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G533890LXL04_001458JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G533900LXL04_001457JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G533930LXL04_001456JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G534000LXL04_001451JCVI_TKOH_0003697.226.362 / 18.492Review
TkA01G534320LXL04_001448JCVI_TKOH_0003696.498.242 / 46.298Review
TkA01G534330LXL04_001449JCVI_TKOH_00036100.013.535 / 7.15Complex
TkA01G534590LXL04_001446JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G534710LXL04_001445JCVI_TKOH_0003699.8100.0 / 100.0Strict
TkA01G534770LXL04_001444JCVI_TKOH_0003698.4100.0 / 95.801Strict
TkA01G534850LXL04_001443JCVI_TKOH_0003693.7100.0 / 100.0Probable
TkA01G534990LXL04_001442JCVI_TKOH_0003683.7100.0 / 100.0Complex
TkA01G535010LXL04_001442JCVI_TKOH_0003660.994.531 / 52.335Complex
TkA01G535310LXL04_001438JCVI_TKOH_00036100.096.707 / 81.156Complex
TkA01G535330LXL04_001437JCVI_TKOH_0003699.399.815 / 98.901Complex
TkA01G535390LXL04_001438JCVI_TKOH_00036100.092.444 / 52.261Review
TkA01G535410LXL04_001437JCVI_TKOH_0003699.8100.0 / 100.0Complex
TkA01G535520LXL04_001436JCVI_TKOH_0003698.7100.0 / 57.524Review
TkA01G535530LXL04_001435JCVI_TKOH_0003694.195.935 / 57.949Review
TkA01G536620LXL04_001432JCVI_TKOH_0003698.2100.0 / 100.0Review
TkA01G536910LXL04_001430JCVI_TKOH_00036100.0100.0 / 63.986Review
TkA01G536950LXL04_001429JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G537970LXL04_001429JCVI_TKOH_0003673.294.485 / 99.388Complex
TkA01G538340LXL04_001429JCVI_TKOH_0003692.1100.0 / 65.291Complex
TkA01G539130LXL04_001422JCVI_TKOH_0003699.5100.0 / 90.224Strict
TkA01G539180LXL04_001421JCVI_TKOH_0003699.7100.0 / 100.0Strict
TkA01G539190LXL04_001420JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G539230LXL04_001418JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G539290LXL04_001417JCVI_TKOH_0003699.0100.0 / 100.0Complex
TkA01G539300LXL04_001416JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G539310LXL04_001415JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G539500LXL04_001413JCVI_TKOH_00036100.0100.0 / 65.698Complex
TkA01G539540LXL04_001411JCVI_TKOH_0003699.8100.0 / 100.0Strict
TkA01G539620LXL04_001408JCVI_TKOH_0003698.385.545 / 94.01Strict
TkA01G539710LXL04_001406JCVI_TKOH_0003698.2100.0 / 100.0Strict
TkA01G539860LXL04_001404JCVI_TKOH_0003679.6100.0 / 25.415Complex
TkA01G539900LXL04_001403JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G539910LXL04_001402JCVI_TKOH_0003697.899.4 / 53.098Review
TkA01G539920LXL04_001401JCVI_TKOH_0003699.393.243 / 45.545Review
TkA01G540100LXL04_001399JCVI_TKOH_0003694.196.476 / 48.684Review
TkA01G540290LXL04_001397JCVI_TKOH_0003697.4100.0 / 100.0Complex
TkA01G540390LXL04_001396JCVI_TKOH_0003699.4100.0 / 92.72Complex
TkA01G540720LXL04_001392JCVI_TKOH_0003699.1100.0 / 100.0Review
TkA01G540800LXL04_001391JCVI_TKOH_0003685.772.956 / 60.287Complex
TkA01G540850LXL04_001390JCVI_TKOH_0003694.1100.0 / 78.788Complex
TkA01G541050LXL04_001388JCVI_TKOH_0003694.0100.0 / 100.0Complex
TkA01G541420LXL04_001386JCVI_TKOH_00036100.080.242 / 52.785Complex
TkA01G541520LXL04_001385JCVI_TKOH_0003697.4100.0 / 100.0Complex
TkA01G541550LXL04_001384JCVI_TKOH_0003696.095.513 / 40.599Review
TkA01G541570LXL04_001383JCVI_TKOH_0003666.773.077 / 64.407Review
TkA01G541610LXL04_001382JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G541650LXL04_001381JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G541810LXL04_001379JCVI_TKOH_0003695.7100.0 / 100.0Strict
TkA01G542230LXL04_001376JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G542240LXL04_001375JCVI_TKOH_0003698.898.434 / 100.0Strict
TkA01G542260LXL04_001374JCVI_TKOH_0003699.6100.0 / 100.0Strict
TkA01G542300LXL04_001372JCVI_TKOH_0003699.6100.0 / 84.262Strict
TkA01G542360LXL04_001370JCVI_TKOH_0003698.8100.0 / 100.0Strict
TkA01G542400LXL04_001369JCVI_TKOH_0003698.7100.0 / 100.0Review
TkA01G542520LXL04_001367JCVI_TKOH_0003693.0100.0 / 100.0Probable
TkA01G542640LXL04_001364JCVI_TKOH_0003687.098.784 / 21.382Complex
TkA01G542650LXL04_001364JCVI_TKOH_00036100.0100.0 / 48.837Review
TkA01G542690LXL04_001362JCVI_TKOH_0003697.7100.0 / 100.0Strict
TkA01G542790LXL04_001361JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G542800LXL04_001360JCVI_TKOH_0003683.6100.0 / 100.0Review
TkA01G542860LXL04_001359JCVI_TKOH_00036100.093.491 / 31.102Review
TkA01G542870LXL04_001359JCVI_TKOH_00036100.0100.0 / 60.236Review
TkA01G543940LXL04_001358JCVI_TKOH_00036100.085.556 / 80.84Complex
TkA01G544170LXL04_001357JCVI_TKOH_0003698.2100.0 / 100.0Strict
TkA01G544190LXL04_001356JCVI_TKOH_0003697.985.43 / 85.668Strict
TkA01G544250LXL04_001355JCVI_TKOH_0003699.5100.0 / 100.0Strict
TkA01G544280LXL04_001354JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G544420LXL04_001352JCVI_TKOH_0003699.295.753 / 22.262Review
TkA01G544490LXL04_001351JCVI_TKOH_0003684.339.844 / 33.113Complex
TkA01G544510LXL04_001350JCVI_TKOH_0003689.289.879 / 37.248Complex
TkA01G544740LXL04_001349JCVI_TKOH_0003699.374.257 / 98.039Complex
TkA01G544760LXL04_001347JCVI_TKOH_0003699.7100.0 / 95.75Strict
TkA01G544880LXL04_001346JCVI_TKOH_0003698.5100.0 / 100.0Complex
TkA01G544890LXL04_001345JCVI_TKOH_0003689.8100.0 / 100.0Review
TkA01G544900LXL04_001344JCVI_TKOH_0003687.796.865 / 45.562Complex
TkA01G544910LXL04_001341JCVI_TKOH_0003664.588.636 / 29.94Complex