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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G279500
Reference: TK1151 Chr: Chr08 Coordinates: 72678295-72682489 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2584 bp · TkA08G279500|TK1151|cDNA

CACATGTGCTCCGTTTACAAAGGTAACGCTAATAATCGTAAAGTTGCACAGCTCCACGGCGTTCTACGCCCGTACCGAATAGCCTAACAGTGGTGGTAATCCTCTCCACGCTACTACTCTACAGTTGCACAGCTCCTCAGAAGCCCTATATCAAGCAACTGCCAAAGCGAAGTTTAGAACTGCTATCGATTTGGCGTTTCTTTTGCGGTTTTGTCGATCTAATAATCGTTCAGAAATAATGGCCGAGTTGATGCCAATAG...

CDS

Download CDS FASTA

2112 bp · TkA08G279500|TK1151|CDS

ATGGCCGAGTTGATGCCAATAGAAGACAAAGCGGCTCGTTTAAACATAGATTTGGCATCAGTTGATTGGAACTCTGTTAATCTCCCTACCGGTGAAGACTTTGGTATCACAAGTGATGATGATGATCTTAACGAGGAAGATCCTTTGGAATTCGATCCTGGATTTGCAAATATCATTGTTGTTGATAACCTGCCAGTTGTCCCTCGTGAGAAATTTGAAAAGCTCGAAGGTGTAGTTCGTAAAATCTACAGCCAAATTGG...

Protein

Download Protein FASTA

703 aa · TkA08G279500|TK1151|PROTEIN

MAELMPIEDKAARLNIDLASVDWNSVNLPTGEDFGITSDDDDLNEEDPLEFDPGFANIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKENGLWMPVEEDTGKTLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVSMFDEIDKFMKVPDEWAPPEIKPYTPGENLQQWLTDEKGRDQFVIRAGSDTEVLWNDARQVKADPVYKRPFWTESFVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G279500
TK1151 IDTkA08G279500
OH-1004 IDLXL04_011474
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)23.100
Protein coverage (%)TK1151 58.464 / OH-1004 77.237
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G279500
LocationChr08:72678295-72682489 (-)
DescriptionSimilar to eif2a: Eukaryotic translation initiation factor 2A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g27640 RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011474 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002183 cytoplasmic translational initiation Biological Process
GO:0006412 translation Biological Process
GO:0006413 translational initiation Biological Process
GO:0006417 regulation of translation Biological Process
GO:0006468 protein phosphorylation Biological Process
GO:0009967 positive regulation of signal transduction Biological Process
GO:0032933 SREBP signaling pathway Biological Process
GO:0042255 ribosome assembly Biological Process
GO:1990928 response to amino acid starvation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005850 eukaryotic translation initiation factor 2 complex Cellular Component
KEGG gene cross-reference
ddi:DDB_G0284267
dre:573991
gga:425042
mmu:229317
spo:2540999
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.636
Rank 1 · TkA08G279500 · TK1151
Golgi apparatus0.221
Rank 2 · TkA08G279500 · TK1151
Nucleus0.159
Rank 3 · TkA08G279500 · TK1151
Cell membrane0.123
Rank 4 · TkA08G279500 · TK1151
Endoplasmic reticulum0.102
Rank 5 · TkA08G279500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05970PIF157-86 aa
PF00076RRM_179-133 aa
PF24457DUF7572124-148 aa
PF25174Beta-prop_THOC3183-370 aa
PF08662eIF2A202-271 aa
PF04762Beta-prop_ELP1_1st213-231 aa
PF24817WD40_WDHD1_1st214-252 aa
PF25460Beta-prop_Aladin215-269 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G279500PF05970PIF157860.3111.3
TkA08G279500PF00076RRM_1791333.4e-0730.7
TkA08G279500PF24457DUF75721241480.1912.8
TkA08G279500PF25174Beta-prop_THOC31833703.5e-1246.6
TkA08G279500PF08662eIF2A2022712.6e-67227.2
TkA08G279500PF04762Beta-prop_ELP1_1st2132316e-0522.8
TkA08G279500PF24817WD40_WDHD1_1st2142521.4e-0628.4
TkA08G279500PF25460Beta-prop_Aladin2152696.5e-0522.9
TkA08G279500PF24814WD40_Prp192152690.0003720.4
TkA08G279500PF23381Beta-prop_IFT122_1st2162701.1e-0938.8
TkA08G279500PF12894ANAPC4_WD402162339.1e-0832.9
TkA08G279500PF00400WD402162270.0005121.2
TkA08G279500PF00400WD402492680.0005121.2
TkA08G279500PF24814WD40_Prp192833040.0003720.4
TkA08G279500PF12894ANAPC4_WD402843039.1e-0832.9
TkA08G279500PF25558DUF79303093450.2212.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C5Z1Arabidopsis thalianasp|Q9C5Z1|EIF3B_ARATH Eukaryotic translation initiation factor 3 subunit B72.000%Swiss-ProtHigh

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