LXL04_011474 | RubberDandelionOmics

Gene overview

LXL04_011474

Reference: OH-1004 Chr: Chr02 Coordinates: 164917948-164920461 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1545 bp · LXL04_011474|LXL04_011474|OH1004|cDNA

ATGTCAGTTGCAAACTCGTCACCGGCATTGGAGATTCTAGTTAGAGAACCGGAGGGTTTAGTTATATGGAATGGACCACCTTACAGTAGTAATCAAGCCAGTATCAAACTCGATAGAGTAGCTTGTACAAGTGCAAAATTCAGCGAAGATGGATCCAAACTCATGGTGATAAAATCCGAATCTTCCATTAGCATCTACGATTCCAAAACCTCAAAAGAGATAAGATCATTCAAATCCCCCGACATTCTTGCTGCCTCTTT...

CDS

Download CDS FASTA

1545 bp · LXL04_011474|LXL04_011474|OH1004|CDS

ATGTCAGTTGCAAACTCGTCACCGGCATTGGAGATTCTAGTTAGAGAACCGGAGGGTTTAGTTATATGGAATGGACCACCTTACAGTAGTAATCAAGCCAGTATCAAACTCGATAGAGTAGCTTGTACAAGTGCAAAATTCAGCGAAGATGGATCCAAACTCATGGTGATAAAATCCGAATCTTCCATTAGCATCTACGATTCCAAAACCTCAAAAGAGATAAGATCATTCAAATCCCCCGACATTCTTGCTGCCTCTTT...

Protein

Download Protein FASTA

514 aa · LXL04_011474|LXL04_011474|OH1004|PROTEIN

MSVANSSPALEILVREPEGLVIWNGPPYSSNQASIKLDRVACTSAKFSEDGSKLMVIKSESSISIYDSKTSKEIRSFKSPDILAASLSPCGTYLQTFQKLSTPQEKNVTLWKTETGESVYTMSQKNMTKATWPSFRFSSDEAVASRMATNELQLFDTRDFSKGVVHKIRIPGIAAAELSKNPGSHVAAFVPESKGKPGSIQIYACAPDSDGQAIRVKSFFRCSTVQQHWNNGSTGVLVVVHSDVDKTNQSYYGESKLYYL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011474`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_011474`
Location	Chr02:164917948-164920461 (+)
Description	Similar to eif2a: Eukaryotic translation initiation factor 2A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_011474` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0002183 cytoplasmic translational initiation Biological Process GO:0006412 translation Biological Process GO:0006413 translational initiation Biological Process GO:0006417 regulation of translation Biological Process GO:0006468 protein phosphorylation Biological Process GO:0009967 positive regulation of signal transduction Biological Process GO:0032933 SREBP signaling pathway Biological Process GO:0042255 ribosome assembly Biological Process GO:1990928 response to amino acid starvation Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005850 eukaryotic translation initiation factor 2 complex Cellular Component
KEGG gene cross-reference	ddi:DDB_G0284267 dre:573991 gga:425042 mmu:229317 spo:2540999 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.703

Rank 1 · LXL04_011474 · OH-1004

Nucleus0.177

Rank 2 · LXL04_011474 · OH-1004

Golgi apparatus0.112

Rank 3 · LXL04_011474 · OH-1004

Cell membrane0.103

Rank 4 · LXL04_011474 · OH-1004

Lysosome / Vacuole0.069

Rank 5 · LXL04_011474 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25174.2Beta-prop_THOC328-129 aa

PF24817.2WD40_WDHD1_1st39-129 aa

PF23381.2Beta-prop_IFT122_1st43-129 aa

PF08662.18eIF2A217-410 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011474	`PF25174.2`	Beta-prop_THOC3	28	129	4e-12	46.4
LXL04_011474	`PF24817.2`	WD40_WDHD1_1st	39	129	4.4e-08	33.4
LXL04_011474	`PF23381.2`	Beta-prop_IFT122_1st	43	129	5.7e-11	43.0
LXL04_011474	`PF08662.18`	eIF2A	217	410	5.4e-80	268.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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