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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G117770
Reference: TK1151 Chr: Chr06 Coordinates: 30844457-30847386 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2159 bp · TkA06G117770|TK1151|cDNA

CGGGGTTAACGGAGGGAGTAGTTATTTACAAATTTGACCCTTAACTAAGTAAGCTTCTCAGCTACGCCTAAAAACTCCCGCGTCAATTCCAGAAACAAATGGGCGTGTCTCAGTGTTCCTTTTGCGTTCGTTAGGGTTTTATCTGCAACTCGTTCGATTTGAAAACAGAGAATTCTGAAGCATATTCACCAATCGGATTTCGCTTAATTGAGAAGTAGTTACTTGTTTCTGTTATTTGGTTCTAGCAATGGGAAAGCGGG...

CDS

Download CDS FASTA

1701 bp · TkA06G117770|TK1151|CDS

ATGGGAAAGCGGGCAACCATTGTTTTATCATCATCGGATGATGATGACAAGGACTTTGCAGCGGAGTCGATTTTGAAGTATTTCAAGAAGCCGAAAGCGGGAGCGGCATCTGTTCCTCGAACTAACAGTAAGGGATCGAAGAAAGCTCGGATTTCGAGCTCTCGTTCTCATCCTGGCAAAACTGGCAATCCGTTTGACGAGATGAAAATGTTCTGTGAGGATTTCGGTGAAGGTTTTACTGGGTTCAAGGTACCTCCTGG...

Protein

Download Protein FASTA

566 aa · TkA06G117770|TK1151|PROTEIN

MGKRATIVLSSSDDDDKDFAAESILKYFKKPKAGAASVPRTNSKGSKKARISSSRSHPGKTGNPFDEMKMFCEDFGEGFTGFKVPPGHKRDNKELWVDKYKPRSLLDLSVHKKKVEEVKLWLEERIITKNNNHHNHVLVISGQPGVGKSATVHTIASHLGATVYEWNTPTPTIWQEHLHTTNAGLRYMSKLDEFENFVEKIRKYGLISSQKKPFIILIDDLPVTNGKISFARLQRCLNLLVQSVCIPTVILITDYGKTET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G117770
TK1151 IDTkA06G117770
OH-1004 IDLXL04_024677
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G117770
LocationChr06:30844457-30847386 (+)
DescriptionSimilar to RAD17: Cell cycle checkpoint protein RAD17
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g66130 Seems to be involved in regulation of DNA repair correlated to non-homologous double strand breaks (DSBs) repair.
The Rad17 homologue of Arabidopsis is involved in the regulation of DNA damage repair and homologous recombination.2004 · DOI: 10.1111/j.1365-313x.2004.02097.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024677 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000076 DNA replication checkpoint signaling Biological Process
GO:0000077 DNA damage checkpoint signaling Biological Process
GO:0006281 DNA repair Biological Process
GO:0006282 regulation of DNA repair Biological Process
GO:0006952 defense response Biological Process
GO:0006974 DNA damage response Biological Process
GO:0008156 negative regulation of DNA replication Biological Process
GO:0031347 regulation of defense response Biological Process
GO:0031573 mitotic intra-S DNA damage checkpoint signaling Biological Process
GO:0033314 mitotic DNA replication checkpoint signaling Biological Process
GO:0042325 regulation of phosphorylation Biological Process
GO:1990166 protein localization to site of double-strand break Biological Process
KEGG gene cross-reference
ath:AT5G66130
hsa:5884
mmu:19356
pon:100190842
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.932
Rank 1 · TkA06G117770 · TK1151
Cytoplasm0.115
Rank 2 · TkA06G117770 · TK1151
Mitochondrion0.022
Rank 3 · TkA06G117770 · TK1151
Cell membrane0.022
Rank 4 · TkA06G117770 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA06G117770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03215Rad1789-257 aa
PF05729NACHT94-122 aa
PF05496RuvB_N101-169 aa
PF12775AAA_7126-222 aa
PF24883NPHP3_N129-161 aa
PF00931NB-ARC129-220 aa
PF13086AAA_11130-159 aa
PF03193RsgA_GTPase131-163 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G117770PF03215Rad17892572.4e-2693.5
TkA06G117770PF05729NACHT941220.04214.4
TkA06G117770PF05496RuvB_N1011690.007716.7
TkA06G117770PF12775AAA_71262220.002418.1
TkA06G117770PF24883NPHP3_N1291610.001119.9
TkA06G117770PF00931NB-ARC1292200.1512.3
TkA06G117770PF13086AAA_111301590.2112.0
TkA06G117770PF03193RsgA_GTPase1311630.04314.3
TkA06G117770PF01637ATPase_21312490.1912.2
TkA06G117770PF05673DUF8151322380.007416.2
TkA06G117770PF02367TsaE1321780.008816.7
TkA06G117770PF13245AAA_191321620.01516.1
TkA06G117770PF06414Zeta_toxin1321590.2611.4
TkA06G117770PF20720nSTAND31331630.0003621.0
TkA06G117770PF13401AAA_221341860.003118.5
TkA06G117770PF10609ParA1341610.2911.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9MBA3Arabidopsis thalianasp|Q9MBA3|RAD17_ARATH Cell cycle checkpoint protein RAD1753.200%Swiss-ProtHigh

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