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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G034160
Reference: TK1151 Chr: Chr05 Coordinates: 9215084-9218384 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1482 bp · TkA05G034160|TK1151|cDNA

CCATGATTCCCCTTTCGGTCCCTAAATTGTGTCTTCCAAAACAATATCTTCAAGGGGGAAGTTTTGCGACTCGCGAAAGAGAAACAGCAGCACAGAAACCCTAGAACGTTTTTTCTTGTCGCCTACGAATCAAATCAAATACAAACATACACACAAACAAATCTACGAAGGGAGTGGGAGTTTGGTGAGCGAGTTCTTATTTGTGCGTGTGTGTGTGTATTTTGAAGTTAGTTGAGATGGGGAAGAAGAAGAAGAGAGTA...

CDS

Download CDS FASTA

981 bp · TkA05G034160|TK1151|CDS

ATGGGGAAGAAGAAGAAGAGAGTATCATCAGACGTATGGTGTTATTATTGTGACAGAGAATTCGATGATGAGAAGATTTTGGTTCAGCACCAGAAGGCTAAGCATTTTAAGTGCCATGTCTGCCATAAGAAGCTTTCGACCGCTGGCGGTATGGCCATCCATGTCCTGCAGGTGCATAAAGAAACTGTTTCTAAGGTTCCCAATGCTAAAGAGGGCAGAGAATCAACAGATATTGAAATCTATGGCATGCAGGGTATCCC...

Protein

Download Protein FASTA

326 aa · TkA05G034160|TK1151|PROTEIN

MGKKKKRVSSDVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKETVSKVPNAKEGRESTDIEIYGMQGIPPDVLASHYGDEDNDNPTKVGKMEIPSSHIGMVPGSLGYPPSTMQSMYNPGIPRAGWPVVPPRPQQPWFQQNQVPPAPLGMVQLQQQPLFPVQTIRAPPGLQPSFPVAPPGIGSAPSVPLFPVVVGSSSSSNGMPSQTSPYSSATIQGGVAVSSHSYASGPNTGGPSIGPPPVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G034160
TK1151 IDTkA05G034160
OH-1004 IDLXL04_019253
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G034160
LocationChr05:9215084-9218384 (+)
DescriptionSimilar to SUF4: Protein SUPPRESSOR OF FRI 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g30970 Sequence-specific DNA binding factor that recognizes the 5'- CCAAATTTTAAGTTT-3' sequence.
SUPPRESSOR OF FRI 4 encodes a nuclear-localized protein that is required for delayed flowering in winter-annual Arabidopsis.2006 · DOI: 10.1242/dev.02684
SUPPRESSOR OF FRIGIDA4, encoding a C2H2-Type zinc finger protein, represses flowering by transcriptional activation of Arabidopsis FLOWERING LOCUS C.2006 · DOI: 10.1105/tpc.106.045179
Resetting and regulation of Flowering Locus C expression during Arabidopsis reproductive development.2009 · DOI: 10.1111/j.1365-313x.2008.03776.x
The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors.2011 · DOI: 10.1105/tpc.110.075911

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019253 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0001578 microtubule bundle formation Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process
GO:0008608 attachment of spindle microtubules to kinetochore Biological Process
GO:0009908 flower development Biological Process
GO:0009910 negative regulation of flower development Biological Process
GO:0030154 cell differentiation Biological Process
GO:0046785 microtubule polymerization Biological Process
GO:0050821 protein stabilization Biological Process
GO:0051301 cell division Biological Process
GO:0051983 regulation of chromosome segregation Biological Process
KEGG gene cross-reference
ath:AT1G30970
hsa:7756
mmu:22680
xla:380016
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952
Rank 1 · TkA05G034160 · TK1151
Cytoplasm0.181
Rank 2 · TkA05G034160 · TK1151
Cell membrane0.018
Rank 3 · TkA05G034160 · TK1151
Mitochondrion0.015
Rank 4 · TkA05G034160 · TK1151
Endoplasmic reticulum0.012
Rank 5 · TkA05G034160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10367zf-Vps39_C4-26 aa
PF23107Zf-C2H2_ZNF451_C8-30 aa
PF02748PyrI_C11-26 aa
PF23108Zf-C2H2_ZNF45112-35 aa
PF14369Zn_ribbon_1912-20 aa
PF13894zf-C2H2_413-35 aa
PF12171zf-C2H2_jaz13-32 aa
PF17003Actin_micro13-61 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G034160PF10367zf-Vps39_C4260.2211.9
TkA05G034160PF23107Zf-C2H2_ZNF451_C8300.07414.4
TkA05G034160PF02748PyrI_C11264.67.8
TkA05G034160PF23108Zf-C2H2_ZNF45112352.38.8
TkA05G034160PF14369Zn_ribbon_1912207.27.6
TkA05G034160PF13894zf-C2H2_413355.1e-0524.3
TkA05G034160PF12171zf-C2H2_jaz13320.001919.0
TkA05G034160PF17003Actin_micro13610.3610.8
TkA05G034160PF00096zf-C2H214350.005117.9
TkA05G034160PF00412LIM14490.04114.9
TkA05G034160PF04423Rad50_zn_hook14250.04414.3
TkA05G034160PF04423Rad50_zn_hook25470.04414.3
TkA05G034160PF02748PyrI_C27464.67.8
TkA05G034160PF04780DUF62929641.97.8
TkA05G034160PF12171zf-C2H2_jaz35490.001919.0
TkA05G034160PF23108Zf-C2H2_ZNF45135592.38.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C5G0Arabidopsis thalianasp|Q9C5G0|SUF4_ARATH Protein SUPPRESSOR OF FRI 458.400%Swiss-ProtHigh

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