TkA04G018780 | RubberDandelionOmics

Gene overview

TkA04G018780

Reference: TK1151 Chr: Chr04 Coordinates: 4707117-4709998 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1095 bp · TkA04G018780|TK1151|cDNA

ATGATGGCCCATCTCATAATCTCAGCACCCTGGTGGACCCACGAGAACCCTCTCCCCAATTATCTTCAAGACAGAGAAAATCAAAGAAAGATCACAACTTATCGCCGATTCGAGGCTGCGAAAACATCTGATGAAATGGTCAAAGCATTTCAAGAAATGGAAGCCATTTTGGACGAGAAGGAGCTTGGTTTAGCTTGCTTGAAAATCGGACTAAACTCGACGAAGAAGGTGAGTTTCCAGAAAAAAAGCATATATCGCCC...

CDS

Download CDS FASTA

1095 bp · TkA04G018780|TK1151|CDS

ATGATGGCCCATCTCATAATCTCAGCACCCTGGTGGACCCACGAGAACCCTCTCCCCAATTATCTTCAAGACAGAGAAAATCAAAGAAAGATCACAACTTATCGCCGATTCGAGGCTGCGAAAACATCTGATGAAATGGTCAAAGCATTTCAAGAAATGGAAGCCATTTTGGACGAGAAGGAGCTTGGTTTAGCTTGCTTGAAAATCGGACTAAACTCGACGAAGAAGGTGAGTTTCCAGAAAAAAAGCATATATCGCCC...

Protein

Download Protein FASTA

364 aa · TkA04G018780|TK1151|PROTEIN

MMAHLIISAPWWTHENPLPNYLQDRENQRKITTYRRFEAAKTSDEMVKAFQEMEAILDEKELGLACLKIGLNSTKKVSFQKKSIYRPLNFKEALPYCEKAIEIHKIQLGTNSVEVAHDRRLLEKKEKSSPLQVSEAYMEISMQYETMNEFETAILLLKKAQKILEKIPEEQHSVGSCCARIGWLLLLTGKVQESISYLEDAVERLKENFGSRHFGVGYVYNNLGAAYLELDRPQSAAQVFLLAKDIMDISLGPHHVDSIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G018780`
TK1151 ID	TkA04G018780
OH-1004 ID	LXL04_036887
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 56.319 / OH-1004 31.685 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G018780

Location Chr04:4707117-4709998 (+)

Description Similar to KLCR1: Protein KINESIN LIGHT CHAIN-RELATED 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g27960`	Protein KINESIN LIGHT CHAIN-RELATED 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036887 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007368 determination of left/right symmetry Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0016055 Wnt signaling pathway Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0060271 cilium assembly Biological Process

GO:0090090 negative regulation of canonical Wnt signaling pathway Biological Process

GO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005929 cilium Cellular Component

KEGG gene cross-reference

ath:AT1G27500

ath:AT3G27960

ath:AT4G10840

xla:446530

xtr:780190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.550

Rank 1 · TkA04G018780 · TK1151

Nucleus0.393

Rank 2 · TkA04G018780 · TK1151

Mitochondrion0.099

Rank 3 · TkA04G018780 · TK1151

Cell membrane0.066

Rank 4 · TkA04G018780 · TK1151

Endoplasmic reticulum0.053

Rank 5 · TkA04G018780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18498DUF561820-58 aa

PF25058ARM_TT2138-52 aa

PF13424TPR_1289-120 aa

PF13374TPR_1089-112 aa

PF13181TPR_889-103 aa

PF07719TPR_289-103 aa

PF00515TPR_189-103 aa

PF19867DUF634089-107 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G018780	`PF18498`	DUF5618	20	58	0.11	13.4
TkA04G018780	`PF25058`	ARM_TT21	38	52	0.32	11.7
TkA04G018780	`PF13424`	TPR_12	89	120	2.1e-23	83.0
TkA04G018780	`PF13374`	TPR_10	89	112	4.7e-17	62.1
TkA04G018780	`PF13181`	TPR_8	89	103	1.1e-12	47.7
TkA04G018780	`PF07719`	TPR_2	89	103	5.9e-10	39.2
TkA04G018780	`PF00515`	TPR_1	89	103	1.3e-07	31.9
TkA04G018780	`PF19867`	DUF6340	89	107	0.097	13.6
TkA04G018780	`PF25058`	ARM_TT21	89	172	0.32	11.7
TkA04G018780	`PF13176`	TPR_7	90	105	8.3e-07	29.3
TkA04G018780	`PF21033`	RMD1-3	90	105	0.016	15.2
TkA04G018780	`PF21033`	RMD1-3	90	126	0.016	15.2
TkA04G018780	`PF24885`	TPR_NPHP3	92	237	0.00015	22.0
TkA04G018780	`PF13431`	TPR_17	96	104	2.6	9.2
TkA04G018780	`PF25515`	Arm_PDR	119	166	0.016	16.0
TkA04G018780	`PF18498`	DUF5618	121	167	0.11	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LII8`	Arabidopsis thaliana	sp\|Q9LII8\|KLCR2_ARATH Protein KINESIN LIGHT CHAIN-RELATED 2	25.800%	Swiss-Prot	Low

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