LXL04_036887 | RubberDandelionOmics

Gene overview

LXL04_036887

Reference: OH-1004 Chr: Chr08 Coordinates: 49764015-49766602 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1944 bp · LXL04_036887|LXL04_036887|OH1004|cDNA

ATGAAAAGAGCTTCATTGAGACTTCTGCACTTTCAATTCCCGAAAATTTACCCCCAATCTTCAATCTCTGTTTTCTCTGAAGATTTCATATGTCAGTTTTCATCGGTTCCCTCCATTGATGAACAAAATAACAACCACCCTTCTAATCCCCATTACAGACCCTGCTCTAGAACACAATCTATTCTCTTTTCAAGCAAACGACACCATTTTCATGATACCACATCTCATAATCTCAGCACCCTGGTGGACCCACGAGAACC...

CDS

Download CDS FASTA

1944 bp · LXL04_036887|LXL04_036887|OH1004|CDS

ATGAAAAGAGCTTCATTGAGACTTCTGCACTTTCAATTCCCGAAAATTTACCCCCAATCTTCAATCTCTGTTTTCTCTGAAGATTTCATATGTCAGTTTTCATCGGTTCCCTCCATTGATGAACAAAATAACAACCACCCTTCTAATCCCCATTACAGACCCTGCTCTAGAACACAATCTATTCTCTTTTCAAGCAAACGACACCATTTTCATGATACCACATCTCATAATCTCAGCACCCTGGTGGACCCACGAGAACC...

Protein

Download Protein FASTA

647 aa · LXL04_036887|LXL04_036887|OH1004|PROTEIN

MKRASLRLLHFQFPKIYPQSSISVFSEDFICQFSSVPSIDEQNNNHPSNPHYRPCSRTQSILFSSKRHHFHDTTSHNLSTLVDPREPSLHLSSRQRKIKERSQLIADFEAAKTSDEMVKAFQEMEAILDEKELGLACLKIGLKLDEEGEFPEKVIDYANKALKILDSNDDNNDNDADLSLPLAMNLQLLGSASYNLNRFHESLGYLNRANRILKKLEETIDNNENFQIKHVLHAVHLNLANTKNALGRREDAINDLKKCL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036887`
TK1151 ID	TkA04G018780
OH-1004 ID	LXL04_036887
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 56.319 / OH-1004 31.685 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036887

Location Chr08:49764015-49766602 (-)

Description Similar to KLCR1: Protein KINESIN LIGHT CHAIN-RELATED 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10840`	Protein KINESIN LIGHT CHAIN-RELATED 1.	No verified direct reference in this release
`At3g27960`	Protein KINESIN LIGHT CHAIN-RELATED 2.	No verified direct reference in this release
`At1g27500`	Protein KINESIN LIGHT CHAIN-RELATED 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036887 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007368 determination of left/right symmetry Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0016055 Wnt signaling pathway Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0060271 cilium assembly Biological Process

GO:0090090 negative regulation of canonical Wnt signaling pathway Biological Process

GO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005929 cilium Cellular Component

KEGG gene cross-reference

ath:AT1G27500

ath:AT3G27960

ath:AT4G10840

xla:446530

xtr:780190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.533

Rank 1 · LXL04_036887 · OH-1004

Plastid0.287

Rank 2 · LXL04_036887 · OH-1004

Cytoplasm0.117

Rank 3 · LXL04_036887 · OH-1004

Nucleus0.116

Rank 4 · LXL04_036887 · OH-1004

Peroxisome0.022

Rank 5 · LXL04_036887 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24885.2TPR_NPHP3213-340 aa

PF13424.13TPR_12235-296 aa

PF13374.13TPR_10238-271 aa

PF13424.13TPR_12278-342 aa

PF13424.13TPR_12437-510 aa

PF13424.13TPR_12487-546 aa

PF13424.13TPR_12522-592 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036887	`PF24885.2`	TPR_NPHP3	213	340	1.8e-15	57.7
LXL04_036887	`PF13424.13`	TPR_12	235	296	7e-39	132.6
LXL04_036887	`PF13374.13`	TPR_10	238	271	2.4e-25	88.4
LXL04_036887	`PF13424.13`	TPR_12	278	342	7e-39	132.6
LXL04_036887	`PF13424.13`	TPR_12	437	510	7e-39	132.6
LXL04_036887	`PF13424.13`	TPR_12	487	546	7e-39	132.6
LXL04_036887	`PF13424.13`	TPR_12	522	592	7e-39	132.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81629`	Arabidopsis thaliana	Protein KINESIN LIGHT CHAIN-RELATED 1	27.158%	Swiss-Prot	weak database homology
`Q9LII8`	Arabidopsis thaliana	Protein KINESIN LIGHT CHAIN-RELATED 2	25.591%	Swiss-Prot	weak database homology
`F4HSX9`	Arabidopsis thaliana	Protein KINESIN LIGHT CHAIN-RELATED 3	26.897%	Swiss-Prot	weak database homology

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