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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G014390
Reference: TK1151 Chr: Chr03 Coordinates: 3722911-3725338 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

519 bp · TkA03G014390|TK1151|cDNA

ATGCATCCGCCGACATCCTTCACGCGTCCCTGCTGCTTCTTCCTCGCTGGTTCACGACCTCCATTGTTCTTCTTCCTCGCCGTGGTATTCAAGCTGTCCAAAAGAACTGCTGATGACAACTTGCAGTCACTTCATAGCATCCTTTTTGGAAAACGAGCAAAGTCGAAGGAAGGAGATGATGATGATGATGATGATGAAGAACAGAAAGAACAGGAAGATGATAAAATAGCAAAAAGCTCTTCAAAAAAGCGTGTGAAGAA...

CDS

Download CDS FASTA

519 bp · TkA03G014390|TK1151|CDS

ATGCATCCGCCGACATCCTTCACGCGTCCCTGCTGCTTCTTCCTCGCTGGTTCACGACCTCCATTGTTCTTCTTCCTCGCCGTGGTATTCAAGCTGTCCAAAAGAACTGCTGATGACAACTTGCAGTCACTTCATAGCATCCTTTTTGGAAAACGAGCAAAGTCGAAGGAAGGAGATGATGATGATGATGATGATGAAGAACAGAAAGAACAGGAAGATGATAAAATAGCAAAAAGCTCTTCAAAAAAGCGTGTGAAGAA...

Protein

Download Protein FASTA

172 aa · TkA03G014390|TK1151|PROTEIN

MHPPTSFTRPCCFFLAGSRPPLFFFLAVVFKLSKRTADDNLQSLHSILFGKRAKSKEGDDDDDDDEEQKEQEDDKIAKSSSKKRVKKDSGEKSKSVNKETKSVKKTHVSSSKSKKTNPRKKRKSKTKGKSNKKAKVEPTNEDMHAVVTKILKEVDFNTADPSPIQPHRGEVI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G014390
TK1151 IDTkA03G014390
OH-1004 IDLXL04_006167
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)93.700
Protein coverage (%)TK1151 92.442 / OH-1004 98.742
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G014390
LocationChr03:3722911-3725338 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006167 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:2000779 regulation of double-strand break repair Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003682 chromatin binding Molecular Function
GO:0042393 histone binding Molecular Function
KEGG gene cross-reference
ath:AT3G48710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.924
Rank 1 · TkA03G014390 · TK1151
Cytoplasm0.138
Rank 2 · TkA03G014390 · TK1151
Cell membrane0.027
Rank 3 · TkA03G014390 · TK1151
Endoplasmic reticulum0.020
Rank 4 · TkA03G014390 · TK1151
Mitochondrion0.020
Rank 5 · TkA03G014390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27698Asteroid_N24-123 aa
PF23980Phage_tail_tube_init30-133 aa
PF24347FIGL1_N34-59 aa
PF26705AFDN35-134 aa
PF07093SGT137-145 aa
PF16046FAM7651-153 aa
PF06978POP1_N51-136 aa
PF12720DUF380751-140 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G014390PF27698Asteroid_N241232.58.7
TkA03G014390PF23980Phage_tail_tube_init301330.02914.8
TkA03G014390PF24347FIGL1_N34590.09213.3
TkA03G014390PF26705AFDN351340.001419.6
TkA03G014390PF07093SGT1371452.87.0
TkA03G014390PF16046FAM76511530.3910.8
TkA03G014390PF06978POP1_N511360.4211.3
TkA03G014390PF12720DUF3807511401.59.8
TkA03G014390PF09726Macoilin511383.36.9
TkA03G014390PF12722Hid1521416.85.5
TkA03G014390PF28211GlpR521407.17.3
TkA03G014390PF02724CDC45531350.02813.4
TkA03G014390PF29052PGA28-like_dom531340.4311.0
TkA03G014390PF15713PTPRCAP531450.7910.9
TkA03G014390PF16094PAC153891.88.3
TkA03G014390PF15996PNISR541540.4311.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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