LXL04_036210 | RubberDandelionOmics

Gene overview

LXL04_036210

Reference: OH-1004 Chr: Chr08 Coordinates: 37980017-37983455 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1599 bp · LXL04_036210|LXL04_036210|OH1004|cDNA

ATGGGAGACAAAGCGGACGGTGAGTTCTTCTTAGAGTATAACGAAGATGACGAAGTTCAGTTTGACGATGTCGAAAATAATGACAGTAACGATGATAGCGATGACAATGAAAGTCGCAACTCTGCGCGTTCTTCATCGCATTTCTCCTCTCGTCAATGGCCGCAGAGTTACAAGCAAACAATCGATTCATATTCAATCACAGCAACCCCAAATTTCGGCCTCCTAAGATCTCCTTCCACTACCATATACTCATCACTCCA...

CDS

Download CDS FASTA

1599 bp · LXL04_036210|LXL04_036210|OH1004|CDS

ATGGGAGACAAAGCGGACGGTGAGTTCTTCTTAGAGTATAACGAAGATGACGAAGTTCAGTTTGACGATGTCGAAAATAATGACAGTAACGATGATAGCGATGACAATGAAAGTCGCAACTCTGCGCGTTCTTCATCGCATTTCTCCTCTCGTCAATGGCCGCAGAGTTACAAGCAAACAATCGATTCATATTCAATCACAGCAACCCCAAATTTCGGCCTCCTAAGATCTCCTTCCACTACCATATACTCATCACTCCA...

Protein

Download Protein FASTA

532 aa · LXL04_036210|LXL04_036210|OH1004|PROTEIN

MGDKADGEFFLEYNEDDEVQFDDVENNDSNDDSDDNESRNSARSSSHFSSRQWPQSYKQTIDSYSITATPNFGLLRSPSTTIYSSLHDIGIESNFDAEAKARLLSECEKLYSKEDLEKISRKISTWSGKGSLHEQLGELPISHGCSVTQTVFNAVNVMVGVGLLSTPYTIAQAGWVGLGMLVVFGVICCYTASLMRYCFESKEGIFSYPDIGEAAFGKYGRLIISVVLYTELYSYCVEFIILEGDNLNSLFPGASLNLGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036210`
TK1151 ID	TkA04G063200
OH-1004 ID	LXL04_036210
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036210

Location Chr08:37980017-37983455 (-)

Description Similar to AVT1A: Amino acid transporter AVT1A

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41190`	Amino acid transporter AVT1A.	No verified direct reference in this release
`At2g39130`	Amino acid transporter AVT1C.	No verified direct reference in this release
`At3g54830`	Amino acid transporter AVT1B.	No verified direct reference in this release
`At5g02180`	Amino acid transporter AVT1D.	No verified direct reference in this release
`At3g09340`	Amino acid transporter AVT1F.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036210 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031090 organelle membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G39130

ath:AT2G41190

ath:AT3G09340

ath:AT3G54830

ath:AT5G02180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.462

Rank 1 · LXL04_036210 · OH-1004

Cell membrane0.202

Rank 2 · LXL04_036210 · OH-1004

Cytoplasm0.174

Rank 3 · LXL04_036210 · OH-1004

Golgi apparatus0.153

Rank 4 · LXL04_036210 · OH-1004

Endoplasmic reticulum0.152

Rank 5 · LXL04_036210 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490.25Aa_trans144-524 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036210	`PF01490.25`	Aa_trans	144	524	7.5e-67	226.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80668`	Arabidopsis thaliana	Amino acid transporter AVT1A	58.140%	Swiss-Prot	strong database homology
`F4IUW3`	Arabidopsis thaliana	Amino acid transporter AVT1C	43.646%	Swiss-Prot	moderate database homology
`F4JE35`	Arabidopsis thaliana	Amino acid transporter AVT1B	42.144%	Swiss-Prot	moderate database homology
`Q8GYS4`	Arabidopsis thaliana	Amino acid transporter AVT1D	40.580%	Swiss-Prot	moderate database homology
`F4IZW8`	Arabidopsis thaliana	Amino acid transporter AVT1F	39.739%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card