TkA04G063200 | RubberDandelionOmics

Gene overview

TkA04G063200

Reference: TK1151 Chr: Chr04 Coordinates: 16862533-16866432 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2056 bp · TkA04G063200|TK1151|cDNA

AGTATGCTCCCTTTTTAGAACGACAACAGCACAATAACAAACAAGATAAAGACGTCGTTTTTCTTCAACAAATCAGCTTCATTGCTGTTTTTGGCTACTAGTGGTTTGTCTACAAACTTTCAACCTTAATAAGAAGGGAACCCTAAGTACTTTGAAACAAAGATTCTCAGAAAAATGGGAGACAAAGCGGACGGTGAGTTCTTCTTAGAGTATAACGAAGATGACGAAGTTCAGTTTGACGATGTCGAAAATAATGACAG...

CDS

Download CDS FASTA

1599 bp · TkA04G063200|TK1151|CDS

ATGGGAGACAAAGCGGACGGTGAGTTCTTCTTAGAGTATAACGAAGATGACGAAGTTCAGTTTGACGATGTCGAAAATAATGACAGTAACGATGATAGCGATGACAATGAAAGTCGCAACTCTGCGCGTTCTTCATCGCATTTCTCCTCTCGTCAATGGCCGCAGAGTTACAAGCAAACAATCGATTCATATTCAATCACAGCAACCCCAAATTTCGGCCTCCTAAGATCTCCTTCCACTACCATATACTCATCACTCCA...

Protein

Download Protein FASTA

532 aa · TkA04G063200|TK1151|PROTEIN

MGDKADGEFFLEYNEDDEVQFDDVENNDSNDDSDDNESRNSARSSSHFSSRQWPQSYKQTIDSYSITATPNFGLLRSPSTTIYSSLHDIGIESNFDAEAKARLLSECEKLYSKEDLEKISRKISTWSGKGSLHEQLGELPISHGCSVTQTVFNAVNVMVGVGLLSTPYTIAQAGWVGLGMLVVFGVICCYTASLMRYCFESKEGIFSYPDIGEAAFGKYGRLIISVVLYTELYSYCVEFIILEGDNLNSLFPGASLNLGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G063200`
TK1151 ID	TkA04G063200
OH-1004 ID	LXL04_036210
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G063200

Location Chr04:16862533-16866432 (+)

Description Similar to AVT1A: Amino acid transporter AVT1A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41190`	Amino acid transporter AVT1A.	No verified direct reference in this release
`At2g39130`	Amino acid transporter AVT1C.	No verified direct reference in this release
`At3g54830`	Amino acid transporter AVT1B.	No verified direct reference in this release
`At5g02180`	Amino acid transporter AVT1D.	No verified direct reference in this release
`At5g02170`	Amino acid transporter AVT1E.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036210 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031090 organelle membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G39130

ath:AT2G41190

ath:AT3G09340

ath:AT3G54830

ath:AT5G02180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.462

Rank 1 · TkA04G063200 · TK1151

Cell membrane0.202

Rank 2 · TkA04G063200 · TK1151

Cytoplasm0.174

Rank 3 · TkA04G063200 · TK1151

Golgi apparatus0.153

Rank 4 · TkA04G063200 · TK1151

Endoplasmic reticulum0.152

Rank 5 · TkA04G063200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20237DUF659420-195 aa

PF01490Aa_trans144-524 aa

PF11190DUF2976172-188 aa

PF20237DUF6594270-308 aa

PF11190DUF2976292-310 aa

PF11190DUF2976332-372 aa

PF20237DUF6594352-391 aa

PF20237DUF6594473-518 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G063200	`PF20237`	DUF6594	20	195	0.36	11.4
TkA04G063200	`PF01490`	Aa_trans	144	524	7.5e-67	226.5
TkA04G063200	`PF11190`	DUF2976	172	188	0.26	12.0
TkA04G063200	`PF20237`	DUF6594	270	308	0.36	11.4
TkA04G063200	`PF11190`	DUF2976	292	310	0.26	12.0
TkA04G063200	`PF11190`	DUF2976	332	372	0.26	12.0
TkA04G063200	`PF20237`	DUF6594	352	391	0.36	11.4
TkA04G063200	`PF20237`	DUF6594	473	518	0.36	11.4
TkA04G063200	`PF11190`	DUF2976	493	515	0.26	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80668`	Arabidopsis thaliana	sp\|O80668\|AVT1A_ARATH Amino acid transporter AVT1A	60.500%	Swiss-Prot	High
`F4IUW3`	Arabidopsis thaliana	sp\|F4IUW3\|AVT1C_ARATH Amino acid transporter AVT1C	45.600%	Swiss-Prot	Medium
`F4JE35`	Arabidopsis thaliana	sp\|F4JE35\|AVT1B_ARATH Amino acid transporter AVT1B	44.500%	Swiss-Prot	Medium
`Q8GYS4`	Arabidopsis thaliana	sp\|Q8GYS4\|AVT1D_ARATH Amino acid transporter AVT1D	42.700%	Swiss-Prot	Medium
`Q8LPF4`	Arabidopsis thaliana	sp\|Q8LPF4\|AVT1E_ARATH Amino acid transporter AVT1E	40.800%	Swiss-Prot	Medium

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