LXL04_027620 | RubberDandelionOmics

Gene overview

LXL04_027620

Reference: OH-1004 Chr: Chr06 Coordinates: 20438457-20442527 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1746 bp · LXL04_027620|LXL04_027620|OH1004|cDNA

ATGTCGACACGAGCACAAAGAGTGATGGTGATACATGATGCATCACGAAGTGATGGTTTAAATGTGATCATATCGGCCTTTGAGAGCTTACCAGTTGGATCAGGAGATGAACTCATTCTTCTAGGAGTTATTCATCAACTTACTAGTCCTTTGAAAATCAAGAGCATGAGTGGATTGCATTCCAAAAATATGGACGATGAACAGATAAAGAAGGACGAATACCATAAACAGGAGGAAGTCATGCAACTGTCCACAATTTG...

CDS

Download CDS FASTA

1746 bp · LXL04_027620|LXL04_027620|OH1004|CDS

ATGTCGACACGAGCACAAAGAGTGATGGTGATACATGATGCATCACGAAGTGATGGTTTAAATGTGATCATATCGGCCTTTGAGAGCTTACCAGTTGGATCAGGAGATGAACTCATTCTTCTAGGAGTTATTCATCAACTTACTAGTCCTTTGAAAATCAAGAGCATGAGTGGATTGCATTCCAAAAATATGGACGATGAACAGATAAAGAAGGACGAATACCATAAACAGGAGGAAGTCATGCAACTGTCCACAATTTG...

Protein

Download Protein FASTA

581 aa · LXL04_027620|LXL04_027620|OH1004|PROTEIN

MSTRAQRVMVIHDASRSDGLNVIISAFESLPVGSGDELILLGVIHQLTSPLKIKSMSGLHSKNMDDEQIKKDEYHKQEEVMQLSTICARNKIMFQIDVQSGSSPKKVAAKAAKSLSLTWVVLDRQMKKDRKYFMENLTCGILRMKRDNRVEKLRGPIIMEDKKLRSLRRTSSNEHVSYGEMIPVMSKRELSLKKTPNAQKPTYKLEGGDRRFAPPRDKPQLSSSPPSTDQTSPTASKASTSSFGASEVSTMNSSFTYDGQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027620`
TK1151 ID	TkA07G079110
OH-1004 ID	LXL04_027620
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 86.403 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027620

Location Chr06:20438457-20442527 (+)

Description Similar to PERK3: Proline-rich receptor-like protein kinase PERK3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g38560`	Could be involved in the negative regulation of root growth.	PERK-KIPK-KCBP signalling negatively regulates root growth in Arabidopsis thaliana.2015 · DOI: 10.1093/jxb/eru390
`At3g24540`	Proline-rich receptor-like protein kinase PERK3.	No verified direct reference in this release
`At1g52290`	Proline-rich receptor-like protein kinase PERK15.	No verified direct reference in this release
`At1g07870`	May be involved in plant defense signaling.	No verified direct reference in this release
`At2g28590`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027620 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0090404 pollen tube tip Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0019901 protein kinase binding Molecular Function

KEGG gene cross-reference

ath:AT1G07870

ath:AT1G52290

ath:AT2G28590

ath:AT5G38560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.580

Rank 1 · LXL04_027620 · OH-1004

Cytoplasm0.309

Rank 2 · LXL04_027620 · OH-1004

Nucleus0.288

Rank 3 · LXL04_027620 · OH-1004

Endoplasmic reticulum0.041

Rank 4 · LXL04_027620 · OH-1004

Golgi apparatus0.028

Rank 5 · LXL04_027620 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase299-563 aa

PF07714.24PK_Tyr_Ser-Thr300-565 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027620	`PF00069.32`	Pkinase	299	563	7.8e-43	147.5
LXL04_027620	`PF07714.24`	PK_Tyr_Ser-Thr	300	565	7.6e-45	153.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FFW5`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK8	44.850%	Swiss-Prot	weak database homology
`Q1PEM5`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK3	39.604%	Swiss-Prot	moderate database homology
`Q9C821`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK15	45.085%	Swiss-Prot	weak database homology
`Q9LQQ8`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL5	40.230%	Swiss-Prot	moderate database homology
`Q9SIB6`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL6	37.500%	Swiss-Prot	moderate database homology

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