Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3219 bp · LXL04_024925|LXL04_024925|OH1004|cDNA
ATGGAGAACATGATCGATCAAGACCAGCAGTGGCTGATCAACTCACTGAATGCTACTCTTGATACTAATCAACAAGCTCGATCTTTTGCAGAGGCGTCCTTAAATCAGGCCTCCGTTCAACCTGGTTTTGGAAGCGCTTTATCCAAGATTGCAGCTAACAGGAATCTTCCTCTAGGATCTCGCCAAATATCCTTTTACCATTCTGCGGTTCTTCTAAAACAGTTTATTAAGAAACACTGGCAGGAAGATGACGATGGTTT...
3219 bp · LXL04_024925|LXL04_024925|OH1004|CDS
ATGGAGAACATGATCGATCAAGACCAGCAGTGGCTGATCAACTCACTGAATGCTACTCTTGATACTAATCAACAAGCTCGATCTTTTGCAGAGGCGTCCTTAAATCAGGCCTCCGTTCAACCTGGTTTTGGAAGCGCTTTATCCAAGATTGCAGCTAACAGGAATCTTCCTCTAGGATCTCGCCAAATATCCTTTTACCATTCTGCGGTTCTTCTAAAACAGTTTATTAAGAAACACTGGCAGGAAGATGACGATGGTTT...
Protein
Download Protein FASTA1072 aa · LXL04_024925|LXL04_024925|OH1004|PROTEIN
MENMIDQDQQWLINSLNATLDTNQQARSFAEASLNQASVQPGFGSALSKIAANRNLPLGSRQISFYHSAVLLKQFIKKHWQEDDDGFEHPVVSNEEKAIIRGLLLLSLDDPHRKICTAISMAVASVASHDWPDEWPDLLPFLIKLINDQTNTNAVNGALRCLALLSADLDDKLVPKIIPVLFPCLHAIVSSPQIYEKPLRTKAISIVYSCTSMLGVMSGVYKTETSALMLPLVKSWMVEFSSILKNPVQSEDPDDWSIRM...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024925 |
|---|---|
| TK1151 ID | TkA06G095540 |
| OH-1004 ID | LXL04_024925 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.700 |
| Protein coverage (%) | TK1151 96.105 / OH-1004 93.190Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024925 |
|---|---|
| Location | Chr05:102241139-102247347 (+) |
| Description | Similar to Ipo9: Importin-9 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006606 protein import into nucleus Biological Process GO:0010498 proteasomal protein catabolic process Biological Process GO:0031144 proteasome localization Biological Process GO:0042254 ribosome biogenesis Biological Process GO:0050821 protein stabilization Biological Process GO:0005634 nucleus Cellular Component GO:0005635 nuclear envelope Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0016020 membrane Cellular Component GO:0005525 GTP binding Molecular Function |
| KEGG gene cross-reference | ddi:DDB_G0269860 dme:Dmel_CG5252 hsa:55705 spo:2541885 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03810.26IBN_N30-108 aaPF08389.19Xpo1114-171 aaPF25018.2HEAT_IPO9_c352-591 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024925 | PF03810.26 | IBN_N | 30 | 108 | 5.4e-12 | 46.3 |
| LXL04_024925 | PF08389.19 | Xpo1 | 114 | 171 | 4.2e-08 | 34.1 |
| LXL04_024925 | PF25018.2 | HEAT_IPO9_c | 352 | 591 | 4.4e-12 | 46.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.