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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G095540
Reference: TK1151 Chr: Chr06 Coordinates: 25402916-25409506 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3505 bp · TkA06G095540|TK1151|cDNA

TTTAACCCGACCCGCCAAAATTACCAGTCGCTCCACTATGTTTTTGTAAAACCCTAATTGGACCACTCACCCACCACATATATTCCTTTGCCATTTCCCCAAATTCTTAGAAAGAGCGGGAAACATACGCAAACATAGATACACCTTAAACACACTCACTTCAATTTCACAATCGCATTGCAAAAGTCGTTAAAAATGGAGAACATGATCGATCAAGACCAGCAGTGGCTGATCAACTCACTGAATGCTACTCTTGATAC...

CDS

Download CDS FASTA

3084 bp · TkA06G095540|TK1151|CDS

ATGGAGAACATGATCGATCAAGACCAGCAGTGGCTGATCAACTCACTGAATGCTACTCTTGATACTAATCAACAAGCTCGATCTTTTGCAGAGGCGTCCTTAAATCAGGCCTCCGTTCAACCTGGTTTTGGAAGCGCTTTATCCAAGATTGCAGCTAACAGGAATCTTCCTCTAGGATCTCGCCAACTAGCTGCGGTTCTTCTAAAACAGTTTATTAAGAAACACTGGCAGGAAGATGACGATGGTTTTGAACATCCTGT...

Protein

Download Protein FASTA

1027 aa · TkA06G095540|TK1151|PROTEIN

MENMIDQDQQWLINSLNATLDTNQQARSFAEASLNQASVQPGFGSALSKIAANRNLPLGSRQLAAVLLKQFIKKHWQEDDDGFEHPVVSNEEKAIIRGLLLLSLDDPHRKICTAISMAVASVASHDWPDEWPDLLPFLIKLINDQTNTNAVNGALRCLALLSADLDDKLVPKIIPVLFPCLHAIVSSPQIYEKPLRTKAISIVYSCTSMLGVMSGVYKTETSALMLPLIKSWMVEFSSILKNPVQSEDPDDWSIRMETLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G095540
TK1151 IDTkA06G095540
OH-1004 IDLXL04_024925
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 96.105 / OH-1004 93.190
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G095540
LocationChr06:25402916-25409506 (-)
DescriptionSimilar to Ipo9: Importin-9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024925 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006606 protein import into nucleus Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0031144 proteasome localization Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0050821 protein stabilization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016020 membrane Cellular Component
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ddi:DDB_G0269860
dme:Dmel_CG5252
hsa:55705
spo:2541885
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.754
Rank 1 · TkA06G095540 · TK1151
Cytoplasm0.523
Rank 2 · TkA06G095540 · TK1151
Cell membrane0.033
Rank 3 · TkA06G095540 · TK1151
Lysosome / Vacuole0.030
Rank 4 · TkA06G095540 · TK1151
Endoplasmic reticulum0.029
Rank 5 · TkA06G095540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27435TP_0813_N5-26 aa
PF03810IBN_N30-104 aa
PF02985HEAT99-124 aa
PF24987HEAT_EF3_N100-182 aa
PF23271HEAT_GCN1105-183 aa
PF25780TPR_IPO5109-147 aa
PF08389Xpo1110-167 aa
PF13513HEAT_EZ128-159 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G095540PF27435TP_0813_N5260.03214.7
TkA06G095540PF03810IBN_N301044e-1659.5
TkA06G095540PF02985HEAT991240.0005220.7
TkA06G095540PF24987HEAT_EF3_N1001820.001619.1
TkA06G095540PF23271HEAT_GCN11051830.006717.3
TkA06G095540PF25780TPR_IPO51091470.06514.2
TkA06G095540PF08389Xpo11101674.1e-0834.2
TkA06G095540PF13513HEAT_EZ1281590.01316.7
TkA06G095540PF11865mTOR_dom1301630.212.3
TkA06G095540PF12460MMS19_C1332640.211.3
TkA06G095540PF02985HEAT1341450.0005220.7
TkA06G095540PF01347TPR_Vitellogenin1362000.1811.9
TkA06G095540PF13513HEAT_EZ1531810.01316.7
TkA06G095540PF24492HEAT_ECM291561720.004617.8
TkA06G095540PF25758TPR_IPO112182391.4e-1144.8
TkA06G095540PF08389Xpo12372704.1e-0834.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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