LXL04_014719 | RubberDandelionOmics

Gene overview

LXL04_014719

Reference: OH-1004 Chr: Chr03 Coordinates: 55486680-55489299 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1239 bp · LXL04_014719|LXL04_014719|OH1004|cDNA

ATGACGGCAATGGCTGCCTCCCACTTCTTCTGCAATCGCCACGTTAACAGCTCCAGCGATTGTGTACTGAAAATCAGTAACCCCCTTGGAGATGGAAGCTTAAGACTGTATTTTTCTTCTCATAAGCCAAAAGGGTCCTCGTCTTTTCAAACGAAATGCAGAAATTCGAGAACTCATGTGGTCAAAGGCAAAGCCACATCCGATAGCTCAAAACATGACAAAAAACAAGTGGAGCTAGTTTATAATCTTGATGAAAAGCT...

CDS

Download CDS FASTA

1239 bp · LXL04_014719|LXL04_014719|OH1004|CDS

ATGACGGCAATGGCTGCCTCCCACTTCTTCTGCAATCGCCACGTTAACAGCTCCAGCGATTGTGTACTGAAAATCAGTAACCCCCTTGGAGATGGAAGCTTAAGACTGTATTTTTCTTCTCATAAGCCAAAAGGGTCCTCGTCTTTTCAAACGAAATGCAGAAATTCGAGAACTCATGTGGTCAAAGGCAAAGCCACATCCGATAGCTCAAAACATGACAAAAAACAAGTGGAGCTAGTTTATAATCTTGATGAAAAGCT...

Protein

Download Protein FASTA

412 aa · LXL04_014719|LXL04_014719|OH1004|PROTEIN

MTAMAASHFFCNRHVNSSSDCVLKISNPLGDGSLRLYFSSHKPKGSSSFQTKCRNSRTHVVKGKATSDSSKHDKKQVELVYNLDEKLNRLADEVDMNAGLSRLSLFSPCKINVFLRITSKRPDGFHDLASLFHVISLGDKIKFSLSPSKSTDRLSTNVPGIPLDERNLIIKALNLYRKKTGSDKYFWVHVDKRVPTGAGLGGGSSNAATALWAANQFSGGLATEKELQEWSGEIGSDVPFFFSNGAAYCTGRGEIVEDIP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014719`
TK1151 ID	TkA02G402670
OH-1004 ID	LXL04_014719
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014719

Location Chr03:55486680-55489299 (-)

Description Similar to ISPE: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26930`	Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	Chloroplast localization of methylerythritol 4-phosphate pathway enzymes and regulation of mitochondrial genes in ispD and ispE albino mutants in Arabidopsis.2008 · DOI: 10.1007/s11103-008-9297-5

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0802100`	Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014719 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009509 chromoplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G26930

dosa:Os01g0802100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.959

Rank 1 · LXL04_014719 · OH-1004

Mitochondrion0.053

Rank 2 · LXL04_014719 · OH-1004

Cytoplasm0.041

Rank 3 · LXL04_014719 · OH-1004

Peroxisome0.026

Rank 4 · LXL04_014719 · OH-1004

Nucleus0.026

Rank 5 · LXL04_014719 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00288.33GHMP_kinases_N167-244 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014719	`PF00288.33`	GHMP_kinases_N	167	244	7.8e-14	52.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81014`	Arabidopsis thaliana	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic	75.588%	Swiss-Prot	strong database homology
`Q8S2G0`	Oryza sativa subsp. japonica	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic	68.766%	Swiss-Prot	strong database homology

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