LXL04_012545 | RubberDandelionOmics

Gene overview

LXL04_012545

Reference: OH-1004 Chr: Chr03 Coordinates: 14354521-14357663 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1326 bp · LXL04_012545|LXL04_012545|OH1004|cDNA

ATGGCGTCTTCTCTGTTAACCAAACCCTTCGTTGGAGCTTCATCCTCTGGTGAACCCTCACGCTTTGCCTCTCTACGTCACTCAGATCTACGCTCTGCGAACCTCCGTATCTCAACTCACCGCCGATCGCCACCTAAAAAGCTCGAGATACAAGCAGCTGGAAGTACATATGGAAATTACTTTCGTGTAACAACATTTGGTGAATCCCATGGTGGAGGTGTTGGCTGTACCATTGATGGTTGTCCTCCTAGAATCCCCAT...

CDS

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1326 bp · LXL04_012545|LXL04_012545|OH1004|CDS

ATGGCGTCTTCTCTGTTAACCAAACCCTTCGTTGGAGCTTCATCCTCTGGTGAACCCTCACGCTTTGCCTCTCTACGTCACTCAGATCTACGCTCTGCGAACCTCCGTATCTCAACTCACCGCCGATCGCCACCTAAAAAGCTCGAGATACAAGCAGCTGGAAGTACATATGGAAATTACTTTCGTGTAACAACATTTGGTGAATCCCATGGTGGAGGTGTTGGCTGTACCATTGATGGTTGTCCTCCTAGAATCCCCAT...

Protein

Download Protein FASTA

441 aa · LXL04_012545|LXL04_012545|OH1004|PROTEIN

MASSLLTKPFVGASSSGEPSRFASLRHSDLRSANLRISTHRRSPPKKLEIQAAGSTYGNYFRVTTFGESHGGGVGCTIDGCPPRIPISEAELQVDLDRRRPGQSRITTPRKETDTCRIYSGVADGYTTGSPIMIKVPNTDQRGKDYSEMSMAYRPSHADATYDFKYGVRSVEGGGRSSARETIGRVASGALAKKILKAYSGTEILAYVSQAHKVVLPEGLVDHETLTLEQVESNIVRCPNPEYAEKMIAAIDAVRVRGDS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012545`
TK1151 ID	TkA02G555610
OH-1004 ID	LXL04_012545
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.600
Protein coverage (%)	TK1151 93.697 / OH-1004 50.567 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012545

Location Chr03:14354521-14357663 (+)

Description Similar to CS1: Chorismate synthase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g48850`	Catalyzes the last common step of the biosynthesis of aromatic amino acids, produced via the shikimic acid pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012545 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008652 amino acid biosynthetic process Biological Process

GO:0009073 aromatic amino acid family biosynthetic process Biological Process

GO:0009423 chorismate biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004107 chorismate synthase activity Molecular Function

GO:0010181 FMN binding Molecular Function

KEGG gene cross-reference

ath:AT1G48850

cyp:PCC8801_1637

sly:544151

sly:544154

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.644

Rank 1 · LXL04_012545 · OH-1004

Mitochondrion0.432

Rank 2 · LXL04_012545 · OH-1004

Cytoplasm0.047

Rank 3 · LXL04_012545 · OH-1004

Nucleus0.030

Rank 4 · LXL04_012545 · OH-1004

Peroxisome0.015

Rank 5 · LXL04_012545 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01264.27Chorismate_synt61-408 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012545	`PF01264.27`	Chorismate_synt	61	408	1.5e-133	445.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P57720`	Arabidopsis thaliana	Chorismate synthase, chloroplastic	78.719%	Swiss-Prot	strong database homology

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