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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_011322
Reference: OH-1004 Chr: Chr02 Coordinates: 162473016-162475367 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1818 bp · LXL04_011322|LXL04_011322|OH1004|cDNA

ATGCAATTGAACCTAATCGCTGGCACCGATTTCACCAGCACACTCAACTTCCGCCTCTCATCCTCGCTGGCACCGTTGGAGATGACAATGGAGGAAGCGAAGCTTGGAACTGGAAAAGGGAGAAACAGATTCGATTTTGATTACTCCTCCAAGCAATCGATTTATACTATTATTTCCATTGAAATCTCAGTAATCGAACCAACAAAAATGGCGTTCTCGCAAATTCTCAAGCGTTCAACAAGAACACCCGAGACTTTCCG...

CDS

Download CDS FASTA

1818 bp · LXL04_011322|LXL04_011322|OH1004|CDS

ATGCAATTGAACCTAATCGCTGGCACCGATTTCACCAGCACACTCAACTTCCGCCTCTCATCCTCGCTGGCACCGTTGGAGATGACAATGGAGGAAGCGAAGCTTGGAACTGGAAAAGGGAGAAACAGATTCGATTTTGATTACTCCTCCAAGCAATCGATTTATACTATTATTTCCATTGAAATCTCAGTAATCGAACCAACAAAAATGGCGTTCTCGCAAATTCTCAAGCGTTCAACAAGAACACCCGAGACTTTCCG...

Protein

Download Protein FASTA

605 aa · LXL04_011322|LXL04_011322|OH1004|PROTEIN

MQLNLIAGTDFTSTLNFRLSSSLAPLEMTMEEAKLGTGKGRNRFDFDYSSKQSIYTIISIEISVIEPTKMAFSQILKRSTRTPETFRSSVHSSSSSPPITARISASEIIKEPQTFSNQTKLPTHNFPPLLHIHPRSFCNKIIDNADAYSPQVITDAEKLCKMISTHRDTSQLDSLLNSTEIELSPALVVEVLKKLSNAGVFALFFFRWTEKQNGFKHTSDSYDALIEALGKIKQFKVIWTLVNDMKIKGILGKSTFALIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_011322
TK1151 IDTkA03G582010
OH-1004 IDLXL04_011322
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.200
Protein coverage (%)TK1151 100.000 / OH-1004 88.595
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_011322
LocationChr02:162473016-162475367 (-)
DescriptionSimilar to At1g71060: Pentatricopeptide repeat-containing protein At1g71060, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71060 Pentatricopeptide repeat-containing protein At1g71060, mitochondrial. No verified direct reference in this release
At1g77360 Pentatricopeptide repeat-containing protein At1g77360, mitochondrial. No verified direct reference in this release
At3g49730 Pentatricopeptide repeat-containing protein At3g49730. No verified direct reference in this release
At3g62470 Pentatricopeptide repeat-containing protein At3g62470, mitochondrial. No verified direct reference in this release
At1g52640 Pentatricopeptide repeat-containing protein At1g52640, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011322 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G71060
ath:AT1G77360
ath:AT3G49730
ath:AT3G62470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.771
Rank 1 · LXL04_011322 · OH-1004
Plastid0.156
Rank 2 · LXL04_011322 · OH-1004
Nucleus0.067
Rank 3 · LXL04_011322 · OH-1004
Cytoplasm0.036
Rank 4 · LXL04_011322 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_011322 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177.11PPR_long242-331 aa
PF23276.3TPR_24264-383 aa
PF12854.14PPR_1283-315 aa
PF13812.13PPR_3283-334 aa
PF13041.13PPR_2291-332 aa
PF29070.1MSC6_N291-379 aa
PF13041.13PPR_2344-369 aa
PF13812.13PPR_3345-404 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_011322PF17177.11PPR_long2423316.6e-2898.2
LXL04_011322PF23276.3TPR_242643831.4e-2487.2
LXL04_011322PF12854.14PPR_12833153.7e-53177.6
LXL04_011322PF13812.13PPR_32833344e-39133.2
LXL04_011322PF13041.13PPR_22913324e-66219.7
LXL04_011322PF29070.1MSC6_N2913797.3e-2072.1
LXL04_011322PF13041.13PPR_23443694e-66219.7
LXL04_011322PF13812.13PPR_33454044e-39133.2
LXL04_011322PF12854.14PPR_13543853.7e-53177.6
LXL04_011322PF13041.13PPR_23564034e-66219.7
LXL04_011322PF01535.27PPR3593892.6e-48159.6
LXL04_011322PF17177.11PPR_long3654906.6e-2898.2
LXL04_011322PF29070.1MSC6_N3765247.3e-2072.1
LXL04_011322PF12854.14PPR_14234553.7e-53177.6
LXL04_011322PF13041.13PPR_24294754e-66219.7
LXL04_011322PF01535.27PPR4304592.6e-48159.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C9A2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g71060, mitochondrial64.000%Swiss-Protstrong database homology
Q9FVX2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g77360, mitochondrial38.841%Swiss-Protmoderate database homology
P0C8A0Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g4973030.159%Swiss-Protmoderate database homology
Q9LZP3Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g62470, mitochondrial27.602%Swiss-Protweak database homology
Q9SSR6Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g52640, mitochondrial29.605%Swiss-Protweak database homology

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