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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_010985
Reference: OH-1004 Chr: Chr02 Coordinates: 156148093-156150750 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1239 bp · LXL04_010985|LXL04_010985|OH1004|cDNA

ATGGAAGGCATGTCTAGGTCACCACCGGCTGGAAGTTACAGTAATGGCCACCACCACAAGCTGCTCGGCGGCGCCACGTCACAAAGGGATCATTTCGGCTCCCGCAGGTCCCGTCAGAGCGGCGGCAGGGAACCTAACCGCATGACTAGGGTTTCCGGTGGGCAGCAGGAGACGGAGGCGCCTCCTTGTACGGATTTTGATAAGGCTTATTTTCAGTCTTACTCCCACGTCGGTATTCACGAAGAAATGATCAAGGATCG...

CDS

Download CDS FASTA

1239 bp · LXL04_010985|LXL04_010985|OH1004|CDS

ATGGAAGGCATGTCTAGGTCACCACCGGCTGGAAGTTACAGTAATGGCCACCACCACAAGCTGCTCGGCGGCGCCACGTCACAAAGGGATCATTTCGGCTCCCGCAGGTCCCGTCAGAGCGGCGGCAGGGAACCTAACCGCATGACTAGGGTTTCCGGTGGGCAGCAGGAGACGGAGGCGCCTCCTTGTACGGATTTTGATAAGGCTTATTTTCAGTCTTACTCCCACGTCGGTATTCACGAAGAAATGATCAAGGATCG...

Protein

Download Protein FASTA

412 aa · LXL04_010985|LXL04_010985|OH1004|PROTEIN

MEGMSRSPPAGSYSNGHHHKLLGGATSQRDHFGSRRSRQSGGREPNRMTRVSGGQQETEAPPCTDFDKAYFQSYSHVGIHEEMIKDRVRTETYKTAILQHQKYIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASEIALQANEVVKANNLSDKVIVLHGRVEDVQIDEEVDVIVSEWMGYMLLYESMLGSVIVARDRWLKPGGLILPANAVLYMAPVTHPDRYAESIDFWRNVYGIDMSPIMPLAKQCAFEEPSVETI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_010985
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_010985
LocationChr02:156148093-156150750 (+)
DescriptionSimilar to PRMT6: Probable protein arginine N-methyltransferase 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20020 Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os10g0489100 Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). No verified direct reference in this release
UniProt: A2Z8S0 Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). No verified direct reference in this release
Os04g0677066 Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). No verified direct reference in this release
UniProt: A2XYY8 Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010985 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006338 chromatin remodeling Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0032259 methylation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0016274 protein-arginine N-methyltransferase activity Molecular Function
GO:0042054 histone methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G20020
dosa:Os10g0489100
osa:9268644
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.582
Rank 1 · LXL04_010985 · OH-1004
Nucleus0.530
Rank 2 · LXL04_010985 · OH-1004
Mitochondrion0.063
Rank 3 · LXL04_010985 · OH-1004
Cell membrane0.051
Rank 4 · LXL04_010985 · OH-1004
Endoplasmic reticulum0.037
Rank 5 · LXL04_010985 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03848.21TehB84-208 aa
PF08003.18Methyltransf_985-214 aa
PF01728.26FtsJ97-177 aa
PF05175.21MTS99-177 aa
PF02475.24TRM5-TYW2_MTfase104-182 aa
PF06325.20PrmA105-178 aa
PF13489.13Methyltransf_23105-177 aa
PF13847.13Methyltransf_31106-210 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_010985PF03848.21TehB842082.6e-0731.0
LXL04_010985PF08003.18Methyltransf_9852149.2e-0832.1
LXL04_010985PF01728.26FtsJ971773.6e-0731.0
LXL04_010985PF05175.21MTS991771.9e-0834.8
LXL04_010985PF02475.24TRM5-TYW2_MTfase1041821.8e-0732.0
LXL04_010985PF06325.20PrmA1051784.7e-1453.3
LXL04_010985PF13489.13Methyltransf_231051773.4e-0627.6
LXL04_010985PF13847.13Methyltransf_311062101.8e-0835.0
LXL04_010985PF13649.13Methyltransf_251092053e-1454.2
LXL04_010985PF08241.19Methyltransf_111102072.7e-1247.9
LXL04_010985PF08242.19Methyltransf_121102061.7e-0629.4
LXL04_010985PF22528.2PRMT_C2113141.8e-36126.3
LXL04_010985PF22528.2PRMT_C3424001.8e-36126.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q08A71Arabidopsis thalianaProbable protein arginine N-methyltransferase 668.807%Swiss-Protstrong database homology
Q75G68Oryza sativa subsp. japonicaProbable protein arginine N-methyltransferase 6.264.225%Swiss-Protstrong database homology
A2Z8S0Oryza sativa subsp. indicaProbable protein arginine N-methyltransferase 6.264.225%Swiss-Protstrong database homology
Q7XKC0Oryza sativa subsp. japonicaProbable protein arginine N-methyltransferase 6.162.784%Swiss-Protstrong database homology
A2XYY8Oryza sativa subsp. indicaProbable protein arginine N-methyltransferase 6.160.763%Swiss-Protstrong database homology

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