LXL04_002071 | RubberDandelionOmics

Gene overview

LXL04_002071

Reference: OH-1004 Chr: Chr01 Coordinates: 41321280-41324585 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2208 bp · LXL04_002071|LXL04_002071|OH1004|cDNA

ATGGGGAAGCTTGGGAAGAAGGCTCGTAAGTTTGCCAAGAAGAATCTCCCTTCCGTGCTCAAACAAAGAAGAAAGAACAAGATTGTTTTCAAGAAAAGACCTTCAAAAAAAGATAACAAAGATGTCGCTGAAAAGGAAGTAGTGAAGACAGCAGAGTTGCCTAAAGGAAGGGACTCTGAGAATGAAGTCACCACCATGACTACTTCACTTGAAGCTTTATTTGCTGAGGATGACAATGTCATGGTTCTAGATGATTCAGA...

CDS

Download CDS FASTA

2208 bp · LXL04_002071|LXL04_002071|OH1004|CDS

ATGGGGAAGCTTGGGAAGAAGGCTCGTAAGTTTGCCAAGAAGAATCTCCCTTCCGTGCTCAAACAAAGAAGAAAGAACAAGATTGTTTTCAAGAAAAGACCTTCAAAAAAAGATAACAAAGATGTCGCTGAAAAGGAAGTAGTGAAGACAGCAGAGTTGCCTAAAGGAAGGGACTCTGAGAATGAAGTCACCACCATGACTACTTCACTTGAAGCTTTATTTGCTGAGGATGACAATGTCATGGTTCTAGATGATTCAGA...

Protein

Download Protein FASTA

735 aa · LXL04_002071|LXL04_002071|OH1004|PROTEIN

MGKLGKKARKFAKKNLPSVLKQRRKNKIVFKKRPSKKDNKDVAEKEVVKTAELPKGRDSENEVTTMTTSLEALFAEDDNVMVLDDSDSDGYLSEDPSSENITGNDNDVTLEDDRDKHTLSVNNQTIYEELAKQKSTLDKLKKKDPKFLKFLENYNKDKISNTQEVVKNHTSIIHFLLSPTKLLKCPLQQYSDEDETMEDLTVLDDSATTTRKLLTSSLINKWTKLVTEDHNDSALTSLVNAYRAACHLGHEETEFTIQDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002071`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002071

Location Chr01:41321280-41324585 (-)

Description Similar to At2g18220: Nucleolar complex protein 2 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55510`	Collaboratively with CYP40/SQN and ULT1, influences floral meristem (FM) determinacy in an AGAMOUS and SUPERMAN-dependent manner, thus contributing to the floral developmental homeostasis.	No verified direct reference in this release
`At2g18220`	Together with SWA2, probably involved in pre-ribosome export from the nucleus to the cytoplasm.	SLOW WALKER2, a NOC1/MAK21 homologue, is essential for coordinated cell cycle progression during female gametophyte development in Arabidopsis.2009 · DOI: 10.1104/pp.109.142414

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0495500`	Nucleolar complex protein 2 homolog.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002071 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0010582 floral meristem determinacy Biological Process

GO:0042273 ribosomal large subunit biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0030690 Noc1p-Noc2p complex Cellular Component

GO:0030691 Noc2p-Noc3p complex Cellular Component

GO:0003714 transcription corepressor activity Molecular Function

GO:0042393 histone binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT2G18220

ath:AT3G55510

bta:508638

dosa:Os10g0495500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.921

Rank 1 · LXL04_002071 · OH-1004

Cytoplasm0.141

Rank 2 · LXL04_002071 · OH-1004

Mitochondrion0.020

Rank 3 · LXL04_002071 · OH-1004

Cell membrane0.020

Rank 4 · LXL04_002071 · OH-1004

Endoplasmic reticulum0.010

Rank 5 · LXL04_002071 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03715.19Noc2388-681 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002071	`PF03715.19`	Noc2	388	681	1.2e-86	291.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WVH0`	Arabidopsis thaliana	Protein REBELOTE	50.000%	Swiss-Prot	moderate database homology
`Q9ZPV5`	Arabidopsis thaliana	Nucleolar complex-associated protein 2	35.053%	Swiss-Prot	moderate database homology
`Q8LNU5`	Oryza sativa subsp. japonica	Nucleolar complex protein 2 homolog	31.507%	Swiss-Prot	moderate database homology

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