TkAUNG097490 | RubberDandelionOmics

Gene overview

TkAUNG097490

Reference: TK1151 Chr: ChrUn Coordinates: 27526907-27527996 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

828 bp · TkAUNG097490|TK1151|cDNA

ATGCAAAAAGGAAGCTTAGATATGCAGCTCTTTAGAGAAAGTGCAGAACCACTTCCGTGGGACACAAGGATTAAAATAGCCATGGGTGCAGCTAAAGGCCTTGCTTTCTTGCATACTACAGAAAATAATGTCATTTGTAGGGATGTGAAATCCTCAAATATTTTGTTAGATGGGGAGTTTAACGCAAAACTCTCTGATTTTGGACTGGCGAAATCGGGTCCAGTCGATGGAGAGTCTCATGTCACAACAGACATAGCAGG...

CDS

Download CDS FASTA

828 bp · TkAUNG097490|TK1151|CDS

ATGCAAAAAGGAAGCTTAGATATGCAGCTCTTTAGAGAAAGTGCAGAACCACTTCCGTGGGACACAAGGATTAAAATAGCCATGGGTGCAGCTAAAGGCCTTGCTTTCTTGCATACTACAGAAAATAATGTCATTTGTAGGGATGTGAAATCCTCAAATATTTTGTTAGATGGGGAGTTTAACGCAAAACTCTCTGATTTTGGACTGGCGAAATCGGGTCCAGTCGATGGAGAGTCTCATGTCACAACAGACATAGCAGG...

Protein

Download Protein FASTA

275 aa · TkAUNG097490|TK1151|PROTEIN

MQKGSLDMQLFRESAEPLPWDTRIKIAMGAAKGLAFLHTTENNVICRDVKSSNILLDGEFNAKLSDFGLAKSGPVDGESHVTTDIAGTFGYMAPEYVATGRLYVKSDVYAFGVVMLEIITGLQACNYNQDGMKQNLVEWATPFLADIKKLEKVMDPRLGQDYPSEGASKAGKLILSCLAPDHKNRPSMDEVVSGLEVIGSVKMEPRESTANTRGSMSPQCSEQSCPWSPPRTKQGRAVWSLNTRVLGLNMCLGLGSKKDQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG097490`
TK1151 ID	TkAUNG097490
OH-1004 ID	LXL04_015225
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	63.400
Protein coverage (%)	TK1151 85.818 / OH-1004 56.667 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG097490

Location ChrUn:27526907-27527996 (-)

Description Similar to PIX13: Probable serine/threonine-protein kinase PIX13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17220`	May be involved in plant defense signaling.	No verified direct reference in this release
`At2g02800`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g14370`	Involved in disease resistance signaling.	Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.2010 · DOI: 10.1016/j.chom.2010.03.007 xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 The Decoy Substrate of a Pathogen Effector and a Pseudokinase Specify Pathogen-Induced Modified-Self Recognition and Immunity in Plants.2015 · DOI: 10.1016/j.chom.2015.08.004 Ligand-triggered allosteric ADP release primes a plant NLR complex.2019 · DOI: 10.1126/science.aav5868
`At4g35600`	Acts as a spatial inhibitor of signaling that modulates abscission zone cell adhesion and expansion.	No verified direct reference in this release
`At1g26970`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015225 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009838 abscission Biological Process

GO:0045087 innate immune response Biological Process

GO:0060862 negative regulation of floral organ abscission Biological Process

GO:1902458 positive regulation of stomatal opening Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G02800

ath:AT2G17220

ath:AT2G28930

ath:AT4G35600

dosa:Os05g0110900

osa:4337593

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.580

Rank 1 · TkAUNG097490 · TK1151

Cytoplasm0.296

Rank 2 · TkAUNG097490 · TK1151

Nucleus0.260

Rank 3 · TkAUNG097490 · TK1151

Endoplasmic reticulum0.051

Rank 4 · TkAUNG097490 · TK1151

Golgi apparatus0.035

Rank 5 · TkAUNG097490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr1-194 aa

PF00069Pkinase18-192 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG097490	`PF07714`	PK_Tyr_Ser-Thr	1	194	2.2e-26	93.5
TkAUNG097490	`PF00069`	Pkinase	18	192	8e-28	98.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SII6`	Arabidopsis thaliana	sp\|Q9SII6\|PIX13_ARATH Probable serine/threonine-protein kinase PIX13	57.400%	Swiss-Prot	High
`O49840`	Arabidopsis thaliana	sp\|O49840\|PBL3_ARATH Probable serine/threonine-protein kinase PBL3	57.400%	Swiss-Prot	High
`O49839`	Arabidopsis thaliana	sp\|O49839\|PBL2_ARATH Probable serine/threonine-protein kinase PBL2	57.200%	Swiss-Prot	High
`P27450`	Arabidopsis thaliana	sp\|P27450\|CST_ARATH Probable serine/threonine-protein kinase CST	54.100%	Swiss-Prot	High
`Q5PP29`	Arabidopsis thaliana	sp\|Q5PP29\|PBL4_ARATH Probable serine/threonine-protein kinase PBL4	56.100%	Swiss-Prot	High

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