LXL04_015225 | RubberDandelionOmics

Gene overview

LXL04_015225

Reference: OH-1004 Chr: Chr03 Coordinates: 66360670-66363739 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1263 bp · LXL04_015225|LXL04_015225|OH1004|cDNA

atggGAAACTGCTATCCAAAACCTGTTAATAATCTCTCAAGCACCAATAATTCTACCCCAGCTATTCGCAGTGATGTTAAAAGGAAAGAACCCATGGTCCAAAAACATTCACACACGGCGGCTGAAGATGGCAGTGACACCGGTGGGGCCATTAATGGTTCGGGGGAAACGGTACCACCAAGTGGGAGAATAGTGACACCAAACTTAAAGATGTTCACGTTCGCGGAGCTCCGGAGCGCCACCAGAAACTTCCGGCCGGA...

CDS

Download CDS FASTA

1263 bp · LXL04_015225|LXL04_015225|OH1004|CDS

ATGGGAAACTGCTATCCAAAACCTGTTAATAATCTCTCAAGCACCAATAATTCTACCCCAGCTATTCGCAGTGATGTTAAAAGGAAAGAACCCATGGTCCAAAAACATTCACACACGGCGGCTGAAGATGGCAGTGACACCGGTGGGGCCATTAATGGTTCGGGGGAAACGGTACCACCAAGTGGGAGAATAGTGACACCAAACTTAAAGATGTTCACGTTCGCGGAGCTCCGGAGCGCCACCAGAAACTTCCGGCCGGA...

Protein

Download Protein FASTA

420 aa · LXL04_015225|LXL04_015225|OH1004|PROTEIN

MGNCYPKPVNNLSSTNNSTPAIRSDVKRKEPMVQKHSHTAAEDGSDTGGAINGSGETVPPSGRIVTPNLKMFTFAELRSATRNFRPDTMLGEGGFGRVFKGWVDGVTYAPSKVGIGIAVAVKKSNPDSAQGLKEWQAEVKFLGKFSHPNLVKLIGYCWEDREFLLVYEYMQKGSLENHLFKKGAEPIPWSTRIKIAIGAAQGLAFLHTTEKTVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPANGESHVSTGVVGTYGY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015225`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015225

Location Chr03:66360670-66363739 (-)

Description Similar to PIX13: Probable serine/threonine-protein kinase PIX13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17220`	May be involved in plant defense signaling.	No verified direct reference in this release
`At4g35600`	Acts as a spatial inhibitor of signaling that modulates abscission zone cell adhesion and expansion.	No verified direct reference in this release
`At2g28930`	Possible bi-functional kinase.	Light-induced stomatal opening is affected by the guard cell protein kinase APK1b.2014 · DOI: 10.1371/journal.pone.0097161
`At2g02800`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0110900`	Functions downstream of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity.	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.2014 · DOI: 10.1111/tpj.12710

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015225 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009838 abscission Biological Process

GO:0045087 innate immune response Biological Process

GO:0060862 negative regulation of floral organ abscission Biological Process

GO:1902458 positive regulation of stomatal opening Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G02800

ath:AT2G17220

ath:AT2G28930

ath:AT4G35600

dosa:Os05g0110900

osa:4337593

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.701

Rank 1 · LXL04_015225 · OH-1004

Cytoplasm0.234

Rank 2 · LXL04_015225 · OH-1004

Nucleus0.230

Rank 3 · LXL04_015225 · OH-1004

Endoplasmic reticulum0.036

Rank 4 · LXL04_015225 · OH-1004

Golgi apparatus0.025

Rank 5 · LXL04_015225 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr88-363 aa

PF00069.32Pkinase88-361 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015225	`PF07714.24`	PK_Tyr_Ser-Thr	88	363	1.2e-46	159.8
LXL04_015225	`PF00069.32`	Pkinase	88	361	2.9e-45	155.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SII6`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PIX13	62.426%	Swiss-Prot	strong database homology
`P27450`	Arabidopsis thaliana	Probable serine/threonine-protein kinase CST	55.307%	Swiss-Prot	strong database homology
`P46573`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL10	61.489%	Swiss-Prot	strong database homology
`O49840`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL3	60.714%	Swiss-Prot	strong database homology
`Q65XV8`	Oryza sativa subsp. japonica	Receptor-like cytoplasmic kinase 176	59.375%	Swiss-Prot	strong database homology

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