RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG096820
Reference: TK1151 Chr: ChrUn Coordinates: 27363333-27365584 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1447 bp · TkAUNG096820|TK1151|cDNA

TCAGTTTGGTCGGTTTTTTTTCAAATTTTCGGTTTTCTGGTTCGGTTTTGGTCACCAAGGCCCCAAAGTTGAAGTAGGTAGTCGTGTGGACGTGGCCACATTTGTAACCAGATTCTTATGGCGAGGGAGTGTTACCGACTCAAAGCCCTGCCACGACAATCAATTCCCGCTCACCCACCGCCGGAAACTTCTTTATAAACCTCGACTTTCGTCAGCTATTCCTCGCAGACTTCTGTGATCCGATAGCTATAATGGGGGTC...

CDS

Download CDS FASTA

984 bp · TkAUNG096820|TK1151|CDS

ATGGGGGTCAATGAGCTAAACGATAGTAAACCAATGGTGGTTATCAATAAACTCAAGTTCACCTACCCAGGGATCGACGGCCATCCGCCTCCTGGTTCAGTTCCTCTCATCCAAGATTTCTCCCTAACTCTCAACGCCGGTGATCGTTGCCTTCTCGTCGGAGCTAATGGCGCTGGAAAAACGACGATACTGAAGATACTGGGAGGGAAGCACATGGTGGATCCTGATATGGTTAGGGTTCTTGGCAGATCGGCTTTCCA...

Protein

Download Protein FASTA

327 aa · TkAUNG096820|TK1151|PROTEIN

MGVNELNDSKPMVVINKLKFTYPGIDGHPPPGSVPLIQDFSLTLNAGDRCLLVGANGAGKTTILKILGGKHMVDPDMVRVLGRSAFHDTSLTSSGDLAYLGGEWRREVAFAGFDVAIQMDISAEKMLFGVSGVDPQRRAELIKVLDVDLSWRMHKVSDGQRRRVQICMGLLKEFKVLLLDEITVDLDVLARADLLTFLKKECEERGATIIYATHIFDGLENWPSHIVYVAQGKLQLALPMEEVRKMSNLSLMRTVEKWLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG096820
TK1151 IDTkAUNG096820
OH-1004 IDLXL04_024919
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG096820
LocationChrUn:27363333-27365584 (+)
DescriptionSimilar to ABCI20: ABC transporter I family member 20
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g02270 ABC transporter I family member 20. No verified direct reference in this release
At5g44110 ABC transporter I family member 21. No verified direct reference in this release
At1g03905 ABC transporter I family member 19. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024919 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0010114 response to red light Biological Process
GO:0010218 response to far red light Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0030014 CCR4-NOT complex Cellular Component
GO:0030015 CCR4-NOT core complex Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT1G03905
ath:AT5G02270
ath:AT5G44110
sce:YFL028C
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.590
Rank 1 · TkAUNG096820 · TK1151
Nucleus0.389
Rank 2 · TkAUNG096820 · TK1151
Mitochondrion0.098
Rank 3 · TkAUNG096820 · TK1151
Cell membrane0.058
Rank 4 · TkAUNG096820 · TK1151
Endoplasmic reticulum0.043
Rank 5 · TkAUNG096820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005ABC_tran38-183 aa
PF02367TsaE39-70 aa
PF13481AAA_2543-64 aa
PF20720nSTAND344-72 aa
PF13555AAA_2945-64 aa
PF24389ORC-CDC6-like45-67 aa
PF00025Arf48-73 aa
PF13175AAA_1549-67 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG096820PF00005ABC_tran381833.2e-1867.4
TkAUNG096820PF02367TsaE39700.2512.0
TkAUNG096820PF13481AAA_2543640.05313.8
TkAUNG096820PF20720nSTAND344720.212.0
TkAUNG096820PF13555AAA_2945640.01415.9
TkAUNG096820PF24389ORC-CDC6-like45670.1611.4
TkAUNG096820PF00025Arf48730.03314.4
TkAUNG096820PF13175AAA_1549670.01515.6
TkAUNG096820PF13521AAA_2849700.0813.9
TkAUNG096820PF13479AAA_2449870.1612.4
TkAUNG096820PF13604AAA_3049670.2112.0
TkAUNG096820PF00004AAA50820.05314.7
TkAUNG096820PF06414Zeta_toxin50790.2311.6
TkAUNG096820PF13476AAA_2351660.03515.5
TkAUNG096820PF02463SMC_N51650.08113.1
TkAUNG096820PF13401AAA_2251760.2412.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LZ98Arabidopsis thalianasp|Q9LZ98|AB20I_ARATH ABC transporter I family member 2084.100%Swiss-ProtHigh
Q9XF19Arabidopsis thalianasp|Q9XF19|AB21I_ARATH ABC transporter I family member 2162.300%Swiss-ProtHigh
Q3EDJ0Arabidopsis thalianasp|Q3EDJ0|AB19I_ARATH ABC transporter I family member 1962.200%Swiss-ProtMedium

JBrowse

View in Genome Browser