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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG095960
Reference: TK1151 Chr: ChrUn Coordinates: 27144981-27146054 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

879 bp · TkAUNG095960|TK1151|cDNA

ATGATACATCATTTCATTGCTTGCTTAAAGAAATCAAGGGTAGCCATGGTATTTTCACTCATAAAAAAGACCACCGGAAATACAATCATGGCAGCCCTCACCGCCCTCACCCCACCACAGATCTCCTCCTTGACCACCACCATCTCCGCCATCTTCCACCTCCACCACCGCCGTCTCTCCTCCATCCTCTCCTCCCACACCCTCTTCTCCCTCTCCATCCACCACCTCCAAACCCTCTCCCTCCACCAAAAATCCCTCCT...

CDS

Download CDS FASTA

879 bp · TkAUNG095960|TK1151|CDS

ATGATACATCATTTCATTGCTTGCTTAAAGAAATCAAGGGTAGCCATGGTATTTTCACTCATAAAAAAGACCACCGGAAATACAATCATGGCAGCCCTCACCGCCCTCACCCCACCACAGATCTCCTCCTTGACCACCACCATCTCCGCCATCTTCCACCTCCACCACCGCCGTCTCTCCTCCATCCTCTCCTCCCACACCCTCTTCTCCCTCTCCATCCACCACCTCCAAACCCTCTCCCTCCACCAAAAATCCCTCCT...

Protein

Download Protein FASTA

292 aa · TkAUNG095960|TK1151|PROTEIN

MIHHFIACLKKSRVAMVFSLIKKTTGNTIMAALTALTPPQISSLTTTISAIFHLHHRRLSSILSSHTLFSLSIHHLQTLSLHQKSLLIARHLLSILSHLSHFLHPKTTYATTMVNHRDLDSVLLLLLLCEFHQHDPESLKNLSPEKWRDSLSRYVSTTMLTLSGIGFSTGETLMKYIEVVARCRKFVEVMGGGEGKKGREVAASVAAVVALPSVEVEQGGKECVICKEEMREGRDVCEMPCEHRFHWMCILPWLIKRNTC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG095960
TK1151 IDTkAUNG095960
OH-1004 IDLXL04_012377
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)41.100
Protein coverage (%)TK1151 29.452 / OH-1004 22.222
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG095960
LocationChrUn:27144981-27146054 (+)
DescriptionSimilar to RHC2A: Probable E3 ubiquitin-protein ligase RHC2A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g02750 E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
An Arabidopsis E3 ligase, SHOOT GRAVITROPISM9, modulates the interaction between statoliths and F-actin in gravity sensing.2011 · DOI: 10.1105/tpc.110.079442

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012377 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009414 response to water deprivation Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0090378 seed trichome elongation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G39720
ath:AT3G19950
ath:AT3G46620
ath:AT5G59550
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.618
Rank 1 · TkAUNG095960 · TK1151
Cytoplasm0.452
Rank 2 · TkAUNG095960 · TK1151
Cell membrane0.058
Rank 3 · TkAUNG095960 · TK1151
Endoplasmic reticulum0.056
Rank 4 · TkAUNG095960 · TK1151
Mitochondrion0.035
Rank 5 · TkAUNG095960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23809Phage_holin_912-27 aa
PF23809Phage_holin_9137-175 aa
PF26417DUF8112206-274 aa
PF13771zf-HC5HC2H213-250 aa
PF14446Prok-RING_1220-250 aa
PF12678zf-rbx1221-264 aa
PF29452FAR1_N221-264 aa
PF13920zf-C3HC4_3221-266 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG095960PF23809Phage_holin_912270.07613.6
TkAUNG095960PF23809Phage_holin_91371750.07613.6
TkAUNG095960PF26417DUF81122062740.03214.5
TkAUNG095960PF13771zf-HC5HC2H2132502.79.0
TkAUNG095960PF14446Prok-RING_12202502.49.1
TkAUNG095960PF12678zf-rbx12212644.8e-0730.6
TkAUNG095960PF29452FAR1_N2212640.001119.6
TkAUNG095960PF13920zf-C3HC4_32212660.001618.9
TkAUNG095960PF13639zf-RING_22222643.4e-1247.1
TkAUNG095960PF17123zf-RING_112222505.8e-0729.8
TkAUNG095960PF13923zf-C3HC4_22222631.4e-0628.7
TkAUNG095960PF14634zf-RING_52222650.02315.4
TkAUNG095960PF04570zf-FLZ2222370.6710.2
TkAUNG095960PF00097zf-C3HC42232630.0001822.0
TkAUNG095960PF13445zf-RING_UBOX2232610.004117.8
TkAUNG095960PF14447Prok-RING_42232711.79.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GXF8Arabidopsis thalianasp|Q8GXF8|SHGR9_ARATH E3 ubiquitin-protein ligase SGR9, amyloplastic52.000%Swiss-ProtHigh

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