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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG094510
Reference: TK1151 Chr: ChrUn Coordinates: 26705502-26711599 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4793 bp · TkAUNG094510|TK1151|cDNA

CTCGTTCAACGAGCTAACGACGCCGTATTCAACGAGTTCTGACTTAGCGGGTGACTATCGTTTACGCACACTGCAAAACGTTAAAACAAAATTCGACCGTCTTCCACGCCAGATCAACAACGAGAAACCCCCCCAAATTTCCATCCTTTTCGAGATCATATGCTTCAAATCCAATTCAACTACAGTCGCATTCCTTTCTAATTCAAAGAAATGGAAGAGGATAATTATTTGGAGCAGGTGACGGGGAGTCCAACAGCTGG...

CDS

Download CDS FASTA

3837 bp · TkAUNG094510|TK1151|CDS

ATGGAAGAGGATAATTATTTGGAGCAGGTGACGGGGAGTCCAACAGCTGGGGAGAATGGATTTGTTCATATTGAGTCAGTTGATTCTGCTCAAATGGAAGGTGGTTCAATTGATCAGGTTGAGCGTCTGGAGCAGGATGATGGGGTAGTGGTAACAGGAGTGGATGCTGTACAGGATGAGCAGCTTTCTGTAAGAACAGCTGATGATGTGGCACCTGATGAGTTTGTAGATTGCCCAGATGACTTGCTTTCTAATGAAGG...

Protein

Download Protein FASTA

1278 aa · TkAUNG094510|TK1151|PROTEIN

MEEDNYLEQVTGSPTAGENGFVHIESVDSAQMEGGSIDQVERLEQDDGVVVTGVDAVQDEQLSVRTADDVAPDEFVDCPDDLLSNEGRSPGIPNRPHQLPFGRATEDTQHTEPQIEREILPQEIQEEKGDLIKEVSNLHHLLKSLSKQQTLTDVVDGGEKSLEEMVNECSNFIEISLNEQSHAEATISELNATLHMKDKEIEDLMVRVNVNDQSLSQDIALKSNELASVEAIVDRILYSLTPAFGDSGLSDSSVSEKLSH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG094510
TK1151 IDTkAUNG094510
OH-1004 IDLXL04_020715
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)93.300
Protein coverage (%)TK1151 9.155 / OH-1004 39.933
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG094510
LocationChrUn:26705502-26711599 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g24460 Tethering factor involved in vesicle fusion at the trans- Golgi network (TGN) thus being required for efficient protein trafficking to the vacuole.
TNO1 is involved in salt tolerance and vacuolar trafficking in Arabidopsis.2011 · DOI: 10.1104/pp.110.168963
TNO1, a TGN-localized SNARE-interacting protein, modulates root skewing in Arabidopsis thaliana.2017 · DOI: 10.1186/s12870-017-1024-4

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020715 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006623 protein targeting to vacuole Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006906 vesicle fusion Biological Process
GO:0007034 vacuolar transport Biological Process
GO:0009651 response to salt stress Biological Process
GO:0010015 root morphogenesis Biological Process
GO:0010031 circumnutation Biological Process
GO:0010053 root epidermal cell differentiation Biological Process
GO:0010226 response to lithium ion Biological Process
GO:0010555 response to mannitol Biological Process
GO:0022604 regulation of cell morphogenesis Biological Process
GO:0035864 response to potassium ion Biological Process
KEGG gene cross-reference
ath:AT1G24460
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.594
Rank 1 · TkAUNG094510 · TK1151
Golgi apparatus0.250
Rank 2 · TkAUNG094510 · TK1151
Nucleus0.204
Rank 3 · TkAUNG094510 · TK1151
Endoplasmic reticulum0.106
Rank 4 · TkAUNG094510 · TK1151
Cell membrane0.055
Rank 5 · TkAUNG094510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30378CEP135_TSGA10_CC118-216 aa
PF24161CCDC39122-202 aa
PF06818Fez1125-208 aa
PF23649FKBP15126-144 aa
PF00261Tropomyosin133-224 aa
PF19220Rod_CreS149-219 aa
PF06818Fez1255-370 aa
PF19220Rod_CreS300-425 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG094510PF30378CEP135_TSGA10_CC1182160.001917.3
TkAUNG094510PF24161CCDC391222020.001617.1
TkAUNG094510PF06818Fez11252080.3512.0
TkAUNG094510PF23649FKBP151261440.0002221.7
TkAUNG094510PF00261Tropomyosin1332240.008216.3
TkAUNG094510PF19220Rod_CreS1492190.005716.6
TkAUNG094510PF06818Fez12553700.3512.0
TkAUNG094510PF19220Rod_CreS3004250.005716.6
TkAUNG094510PF23649FKBP153044150.0002221.7
TkAUNG094510PF00261Tropomyosin3054260.008216.3
TkAUNG094510PF24161CCDC393074270.001617.1
TkAUNG094510PF30378CEP135_TSGA10_CC3074280.001917.3
TkAUNG094510PF06818Fez13855470.3512.0
TkAUNG094510PF19220Rod_CreS5095890.005716.6
TkAUNG094510PF00261Tropomyosin5406070.008216.3
TkAUNG094510PF28882DUF84735545770.03114.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I9A2Arabidopsis thalianasp|F4I9A2|TNO1_ARATH Trans-Golgi network-localized SYP41-interacting protein 132.900%Swiss-ProtMedium

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