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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG094300
Reference: TK1151 Chr: ChrUn Coordinates: 26664067-26665479 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1068 bp · TkAUNG094300|TK1151|cDNA

ATGTTGGTTCAAGAAGCTTTTCCCGCCATCACTCAAAAACACCCTACAACAGCTAGATCGTTGCAACAGTTTCTATTTACTATCCTCCAAAACGCCAACACCGTTAGGAAAACCACCCAAATCCATACCCAGATAATCATCAACGCATATACCCAAAAAAAGTTCATCATTGTTAAGCTGCTTCAGTCGTATCTATCTTCAGGTCATCTTCAACATGCCCACCAAACTTTTAAACAAGTTAATAACCCTAGCACCACCTC...

CDS

Download CDS FASTA

1068 bp · TkAUNG094300|TK1151|CDS

ATGTTGGTTCAAGAAGCTTTTCCCGCCATCACTCAAAAACACCCTACAACAGCTAGATCGTTGCAACAGTTTCTATTTACTATCCTCCAAAACGCCAACACCGTTAGGAAAACCACCCAAATCCATACCCAGATAATCATCAACGCATATACCCAAAAAAAGTTCATCATTGTTAAGCTGCTTCAGTCGTATCTATCTTCAGGTCATCTTCAACATGCCCACCAAACTTTTAAACAAGTTAATAACCCTAGCACCACCTC...

Protein

Download Protein FASTA

355 aa · TkAUNG094300|TK1151|PROTEIN

MLVQEAFPAITQKHPTTARSLQQFLFTILQNANTVRKTTQIHTQIIINAYTQKKFIIVKLLQSYLSSGHLQHAHQTFKQVNNPSTTSWNQIIRGYAGSDIPRKSLHLFDEMLASGETPDEYTYSYAISACARGKLLRLGEKLHGKVLAGGFCSNLFVQTNLVNLYACHDLDGARKLFDEIPEKNTVSWTTLISGYTRCGVINDAYKVFDKMPSRTTVSWTTMILGFAKQGHGEQALSVFQSMKDDHGSQPDDITMLAVLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG094300
TK1151 IDTkAUNG094300
OH-1004 IDLXL04_034745
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)31.400
Protein coverage (%)TK1151 88.451 / OH-1004 42.814
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG094300
LocationChrUn:26664067-26665479 (+)
DescriptionSimilar to PCMP-E12: Pentatricopeptide repeat-containing protein At4g16470
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g05240 Putative pentatricopeptide repeat-containing protein At3g05240. No verified direct reference in this release
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release
At3g11460 Involved in C-to-U editing of mitochondrial RNA.
MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8.2013 · DOI: 10.1007/s11103-012-0003-2
At3g28640 Putative pentatricopeptide repeat-containing protein At3g28640. No verified direct reference in this release
At3g28660 Pentatricopeptide repeat-containing protein At3g28660. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034745 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G03880
ath:AT3G12770
ath:AT4G16470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.697
Rank 1 · TkAUNG094300 · TK1151
Plastid0.146
Rank 2 · TkAUNG094300 · TK1151
Nucleus0.041
Rank 3 · TkAUNG094300 · TK1151
Cytoplasm0.032
Rank 4 · TkAUNG094300 · TK1151
Cell membrane0.005
Rank 5 · TkAUNG094300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28771RMD9_mid17-96 aa
PF23276TPR_2419-79 aa
PF13041PPR_245-53 aa
PF01535PPR46-54 aa
PF29070MSC6_N55-130 aa
PF13812PPR_359-95 aa
PF13428TPR_1459-80 aa
PF13041PPR_260-79 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG094300PF28771RMD9_mid17960.006816.9
TkAUNG094300PF23276TPR_2419790.0005320.6
TkAUNG094300PF13041PPR_245531.2e-40138.0
TkAUNG094300PF01535PPR46542e-38128.6
TkAUNG094300PF29070MSC6_N551301.8e-0731.3
TkAUNG094300PF13812PPR_359954.1e-1143.5
TkAUNG094300PF13428TPR_1459800.01716.5
TkAUNG094300PF13041PPR_260791.2e-40138.0
TkAUNG094300PF01535PPR60792e-38128.6
TkAUNG094300PF22330Rib_mS39_PPR69960.0001222.6
TkAUNG094300PF17177PPR_long73890.0001921.6
TkAUNG094300PF13041PPR_2831321.2e-40138.0
TkAUNG094300PF12854PPR_183953.9e-2381.6
TkAUNG094300PF01535PPR871152e-38128.6
TkAUNG094300PF13812PPR_3891304.1e-1143.5
TkAUNG094300PF17177PPR_long1042130.0001921.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9MA95Arabidopsis thalianasp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g0524034.900%Swiss-ProtMedium
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333031.300%Swiss-ProtMedium
Q9CAY1Arabidopsis thalianasp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial31.900%Swiss-ProtMedium
Q9LJJ1Arabidopsis thalianasp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g2864031.700%Swiss-ProtMedium
Q9LJI9Arabidopsis thalianasp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g2866031.700%Swiss-ProtMedium

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