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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG092040
Reference: TK1151 Chr: ChrUn Coordinates: 26084504-26090663 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1681 bp · TkAUNG092040|TK1151|cDNA

GAATTGACAATTCCATTCTGTTTTGTATCAGGAAAGAGATGAATTGGTCCGGAAAGGAATCCTAACTCCATTCCATAACCTCAAAGGATATGAACGCCGAATTGAAGAAGACAATCATAATAATAATGATAATTATAATGATCTTCCATCTACTAGTATAGCAAGAGCTGTTAAGTCAATATCAGAGGCTGCAAAAGCTCGCCCTACAACAAAGCTGTTAGATCCTGAATCCTTACCAAGACTTGATCCACCTACCCGCC...

CDS

Download CDS FASTA

1821 bp · TkAUNG092040|TK1151|CDS

ATGACGGGGGCGCCTATACAGAATCGGTTGAGTGAGCTATGGTCGTTGTTTGATTTCGTGTTTCCGGGAAAGTTAGGGGTGTTGCCGGTATTTGAAGCCGAGTTTGCCGTCCCCATTTCGGTTGGTGGGTACGCTAATGCTTCACCTTTGCAAGTCTCAACTGCTTACAGATGTGCAGTAGTGTTACGTGACCTAATAATGCCGTACCTCCTCCGAAGAATGAAATCGGACGTAAACGCTTACCTCCCAAATAAAACCGA...

Protein

Download Protein FASTA

606 aa · TkAUNG092040|TK1151|PROTEIN

MTGAPIQNRLSELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKSDVNAYLPNKTEHVLFCSLTQTQRQLYRAFLASSDVEQIFNGDRNSLYGIDIMRKICNHPDLLERAHAAHNPDYGNPERSGKMKVVANVLKVWKQQGHRVLLFAQTQQMVDILEGFLVAEGYCYRRMDGMTPVRQRMTLMDEFNGCDEIFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG092040
TK1151 IDTkAUNG092040
OH-1004 IDLXL04_036859
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 51.139
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG092040
LocationChrUn:26084504-26090663 (-)
DescriptionSimilar to CHR8: Protein CHROMATIN REMODELING 8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g18760 Essential factor involved in transcription-coupled nucleotide excision repair (TCR) which allows RNA polymerase II-blocking lesions to be rapidly removed from the transcribed strand of active genes. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0102800 Essential factor involved in transcription-coupled nucleotide excision repair (TCR) which allows RNA polymerase II-blocking lesions to be rapidly removed from the transcribed strand of active genes. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036859 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000012 single strand break repair Biological Process
GO:0000077 DNA damage checkpoint signaling Biological Process
GO:0006281 DNA repair Biological Process
GO:0006283 transcription-coupled nucleotide-excision repair Biological Process
GO:0006284 base-excision repair Biological Process
GO:0006289 nucleotide-excision repair Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006366 transcription by RNA polymerase II Biological Process
GO:0006974 DNA damage response Biological Process
GO:0006979 response to oxidative stress Biological Process
KEGG gene cross-reference
ath:AT2G18760
dosa:Os01g0102800
hsa:2074
osa:4326441
sce:YJR035W
spo:2539473
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.917
Rank 1 · TkAUNG092040 · TK1151
Cytoplasm0.145
Rank 2 · TkAUNG092040 · TK1151
Mitochondrion0.028
Rank 3 · TkAUNG092040 · TK1151
Cell membrane0.018
Rank 4 · TkAUNG092040 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkAUNG092040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00176SNF2-rel_dom1-137 aa
PF13604AAA_3094-117 aa
PF11496HDA2-3128-289 aa
PF13604AAA_30155-189 aa
PF00271Helicase_C157-269 aa
PF25877WHD_SOWAH288-311 aa
PF08158SDA1_HEAT289-407 aa
PF02270TFIIF_beta297-320 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG092040PF00176SNF2-rel_dom11373.7e-31109.0
TkAUNG092040PF13604AAA_30941170.05713.9
TkAUNG092040PF11496HDA2-31282891.5e-0525.0
TkAUNG092040PF13604AAA_301551890.05713.9
TkAUNG092040PF00271Helicase_C1572693.3e-2486.0
TkAUNG092040PF25877WHD_SOWAH2883110.01416.0
TkAUNG092040PF08158SDA1_HEAT2894070.779.4
TkAUNG092040PF02270TFIIF_beta2973200.2812.0
TkAUNG092040PF00176SNF2-rel_dom3073283.7e-31109.0
TkAUNG092040PF25877WHD_SOWAH3343730.01416.0
TkAUNG092040PF13604AAA_304004380.05713.9
TkAUNG092040PF25875WHD_Rad26_CSB5436062.9e-1453.7
TkAUNG092040PF25877WHD_SOWAH5456060.01416.0
TkAUNG092040PF02270TFIIF_beta5816060.2812.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZV43Arabidopsis thalianasp|Q9ZV43|CHR8_ARATH Protein CHROMATIN REMODELING 870.900%Swiss-ProtHigh
Q7F2E4Oryza sativa subsp. japonicasp|Q7F2E4|CSB_ORYSJ DNA excision repair protein CSB69.600%Swiss-ProtHigh

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