RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG087910
Reference: TK1151 Chr: ChrUn Coordinates: 24964957-24967570 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1310 bp · TkAUNG087910|TK1151|cDNA

AATTCCGAGCAAAAACAAACTCAGTCACCGAGTTCTAACAAGAGAAGGCGAAAAAACATGGCGAGATCGTCGATCCATTTCACGTTAGCAACTGTAGCTCTGTTCTTAGTCTCTTCAGCCGTCGCCGAATACCTGACATTGACACAAGATAACTTCGAGAAGGAGGTCGGTCAAGATCGCGACGCTCTCGTGGAGTTCTACGCTCCCTGGTGTGGGTACTGCAAAAAGATCGCACCTGAATATGAAAGACTTGGTAATGG...

CDS

Download CDS FASTA

612 bp · TkAUNG087910|TK1151|CDS

ATGGATAACACAAAGCATGTGTTGGTCGAGTTTTCAGCACCCTGGTGTGGTCATTGCCAAAACCTAGCTCCTATCTATGAAAGTCTTGGAGACGCATTTAAAAACGAGGCGGATGTAGTAATAGCCAATGTTAATACTGATAACAACAAAAAAATTGCGGAAAGGTATGAAGTACAAGGAATTCCAAAATTAATATTGTTCTCAAAAGATAATAAAGATGGTGAAGGTTATGGAGGCGCGCTTGATTTAGAAGGTCTTGT...

Protein

Download Protein FASTA

203 aa · TkAUNG087910|TK1151|PROTEIN

MDNTKHVLVEFSAPWCGHCQNLAPIYESLGDAFKNEADVVIANVNTDNNKKIAERYEVQGIPKLILFSKDNKDGEGYGGALDLEGLVSFINEKCGTSRDEEGQLTSNAGVIEILDILVKEFKSAGEDDKQEVYAKIEEETANLNGSLARYGKIYLKVAHGYMVKGTDYAKNEIQRIERLLSKSISPVKADEFILKKNILSAFA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG087910
TK1151 IDTkAUNG087910
OH-1004 IDLXL04_038862
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 56.704
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG087910
LocationChrUn:24964957-24967570 (+)
DescriptionSimilar to Probable protein disulfide-isomerase A6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g47470 Protein disulfide isomerase that may be required for proper pollen development, ovule fertilization and embryo development. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0156300 Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. No verified direct reference in this release
Os01g0339900 Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038862 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009567 double fertilization forming a zygote and endosperm Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0034976 response to endoplasmic reticulum stress Biological Process
GO:0048868 pollen tube development Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005788 endoplasmic reticulum lumen Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009505 plant-type cell wall Cellular Component
KEGG gene cross-reference
ath:AT2G47470
dosa:Os01g0339900
dosa:Os05g0156300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.481
Rank 1 · TkAUNG087910 · TK1151
Cytoplasm0.292
Rank 2 · TkAUNG087910 · TK1151
Lysosome / Vacuole0.128
Rank 3 · TkAUNG087910 · TK1151
Extracellular0.108
Rank 4 · TkAUNG087910 · TK1151
Mitochondrion0.106
Rank 5 · TkAUNG087910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00085Thioredoxin3-91 aa
PF13098Thioredoxin_23-84 aa
PF20207PedC-like3-70 aa
PF13899Thioredoxin_74-67 aa
PF26981Thioredoxin-like_PDI4-50 aa
PF13905Thioredoxin_85-50 aa
PF13728TraF5-73 aa
PF08534Redoxin5-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG087910PF00085Thioredoxin3916.4e-2587.9
TkAUNG087910PF13098Thioredoxin_23841.5e-0629.2
TkAUNG087910PF20207PedC-like3700.00717.1
TkAUNG087910PF13899Thioredoxin_74670.001219.7
TkAUNG087910PF26981Thioredoxin-like_PDI4500.001619.1
TkAUNG087910PF13905Thioredoxin_85501.7e-0732.3
TkAUNG087910PF13728TraF5730.001319.3
TkAUNG087910PF08534Redoxin5800.001718.9
TkAUNG087910PF00578AhpC-TSA7770.0007520.2
TkAUNG087910PF14595Thioredoxin_911740.000321.4
TkAUNG087910PF13192Thioredoxin_314660.1313.0
TkAUNG087910PF04756OST3_OST616738.7e-0626.1
TkAUNG087910PF13848Thioredoxin_621944.4e-0524.2
TkAUNG087910PF07449HyaE29710.03414.9
TkAUNG087910PF13905Thioredoxin_844721.7e-0732.3
TkAUNG087910PF26981Thioredoxin-like_PDI61930.001619.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22263Arabidopsis thalianasp|O22263|PDI21_ARATH Protein disulfide-isomerase like 2-157.900%Swiss-ProtHigh
Q75M08Oryza sativa subsp. japonicasp|Q75M08|PDI21_ORYSJ Protein disulfide isomerase-like 2-155.700%Swiss-ProtHigh
Q942L2Oryza sativa subsp. japonicasp|Q942L2|PDI22_ORYSJ Protein disulfide isomerase-like 2-254.700%Swiss-ProtHigh

JBrowse

View in Genome Browser