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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG076580
Reference: TK1151 Chr: ChrUn Coordinates: 22022695-22023558 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

834 bp · TkAUNG076580|TK1151|cDNA

ATGGATCCTGTAAAAAAGCAGGAAATTGTCGACGATTTGACGACTTTTAGCAACGCGGAAGAGTTTTATAATCGAATTGGGCGAGCTTGGAAACGTGGGTATCTTCTTTATGGTCCGCCTGGTACCGGAAAATCCACCATGATCGCCGCCATGGCGAATTTCCTGTGCTATGATATATACGATCTTGAATTGACAGCTGTGAAAGATAACACGGAGCTCAGAAGGTTGTTGATTGAAACTTCGAGTAAGTCGATTATTGT...

CDS

Download CDS FASTA

834 bp · TkAUNG076580|TK1151|CDS

ATGGATCCTGTAAAAAAGCAGGAAATTGTCGACGATTTGACGACTTTTAGCAACGCGGAAGAGTTTTATAATCGAATTGGGCGAGCTTGGAAACGTGGGTATCTTCTTTATGGTCCGCCTGGTACCGGAAAATCCACCATGATCGCCGCCATGGCGAATTTCCTGTGCTATGATATATACGATCTTGAATTGACAGCTGTGAAAGATAACACGGAGCTCAGAAGGTTGTTGATTGAAACTTCGAGTAAGTCGATTATTGT...

Protein

Download Protein FASTA

277 aa · TkAUNG076580|TK1151|PROTEIN

MDPVKKQEIVDDLTTFSNAEEFYNRIGRAWKRGYLLYGPPGTGKSTMIAAMANFLCYDIYDLELTAVKDNTELRRLLIETSSKSIIVIEDIDCSMDLTGQRKKEKEEPEESDPAKKPSKVTLSGLLNFVDGLWSACGGDRLIVFTTNHVEKLDPALIRRGRMDKHIELSYCGFEAFRVLARNYLYLETHDLFEKIRELLEEIEMTPADVAENLMPKTSPADAEGCLRSLIEALEKMKEEKMKEEEERRKKESAETAAVEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG076580
TK1151 IDTkAUNG076580
OH-1004 IDLXL04_006202
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)96.200
Protein coverage (%)TK1151 100.000 / OH-1004 58.215
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG076580
LocationChrUn:22022695-22023558 (+)
DescriptionSimilar to AATP1: AAA-ATPase ASD, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g28600 AAA-ATPase At3g28600. No verified direct reference in this release
At3g28580 AAA-ATPase At3g28580. No verified direct reference in this release
At5g40010 Required to regulate morphology and anatomy during seed maturation. No verified direct reference in this release
At3g28610 AAA-ATPase At3g28610. No verified direct reference in this release
At3g28510 AAA-ATPase At3g28510. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006202 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000304 response to singlet oxygen Biological Process
GO:0006950 response to stress Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010154 fruit development Biological Process
GO:0010431 seed maturation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G28510
ath:AT3G28540
ath:AT3G28580
ath:AT3G28600
ath:AT5G40010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.569
Rank 1 · TkAUNG076580 · TK1151
Nucleus0.394
Rank 2 · TkAUNG076580 · TK1151
Cell membrane0.112
Rank 3 · TkAUNG076580 · TK1151
Mitochondrion0.101
Rank 4 · TkAUNG076580 · TK1151
Endoplasmic reticulum0.071
Rank 5 · TkAUNG076580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11214Med28-26 aa
PF13521AAA_2815-32 aa
PF03308MeaB22-56 aa
PF13191AAA_1624-67 aa
PF25199nSTAND_NTPase527-93 aa
PF03215Rad1729-60 aa
PF13555AAA_2931-56 aa
PF24883NPHP3_N32-55 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG076580PF11214Med28260.03415.0
TkAUNG076580PF13521AAA_2815320.01915.9
TkAUNG076580PF03308MeaB22560.1611.6
TkAUNG076580PF13191AAA_1624678.6e-0523.8
TkAUNG076580PF25199nSTAND_NTPase527930.1612.5
TkAUNG076580PF03215Rad1729600.08713.5
TkAUNG076580PF13555AAA_2931560.0005220.5
TkAUNG076580PF24883NPHP3_N32550.03914.9
TkAUNG076580PF12775AAA_732670.0713.4
TkAUNG076580PF05673DUF81533910.008815.9
TkAUNG076580PF01078Mg_chelatase33560.03114.4
TkAUNG076580PF00004AAA341693.2e-1867.1
TkAUNG076580PF13086AAA_1134720.0001822.1
TkAUNG076580PF05496RuvB_N34920.0006820.2
TkAUNG076580PF13401AAA_2234790.001120.0
TkAUNG076580PF13479AAA_2434590.001918.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4J0C0Arabidopsis thalianasp|F4J0C0|AATPA_ARATH AAA-ATPase At3g2860068.200%Swiss-ProtHigh
Q9LJJ7Arabidopsis thalianasp|Q9LJJ7|AATP9_ARATH AAA-ATPase At3g2858065.500%Swiss-ProtHigh
Q9FLD5Arabidopsis thalianasp|Q9FLD5|ASD_ARATH AAA-ATPase ASD, mitochondrial66.300%Swiss-ProtHigh
Q9LJJ5Arabidopsis thalianasp|Q9LJJ5|AATPB_ARATH AAA-ATPase At3g2861064.600%Swiss-ProtHigh
Q9LH84Arabidopsis thalianasp|Q9LH84|AATP5_ARATH AAA-ATPase At3g2851062.500%Swiss-ProtHigh

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