Gene Card
Gene overview
cDNA / CDS / Protein Sequences
774 bp · TkAUNG067160|TK1151|cDNA
ATGGCTCTTAGGCTTCCATTGCTAAATGCTTACTCGGACAAAGGTGCTACATTTGATAACGGTGTAAACTTCGCGGTGGCTGCAAGCACAGCCCTCGACTTACCATTTTTCTTGGCGAGGGGGATCCTGCGTCCCCCTCTCCCACCTCTCAGTGTTCAACTACAATGGTTTAGAGAGCATCTCAAATCCATATGCTCATCACCAACAGAATGTGCAGATAAGTTAAGCAAATCGCTCGTGATTGTGGGTGAAACCGGATA...
774 bp · TkAUNG067160|TK1151|CDS
ATGGCTCTTAGGCTTCCATTGCTAAATGCTTACTCGGACAAAGGTGCTACATTTGATAACGGTGTAAACTTCGCGGTGGCTGCAAGCACAGCCCTCGACTTACCATTTTTCTTGGCGAGGGGGATCCTGCGTCCCCCTCTCCCACCTCTCAGTGTTCAACTACAATGGTTTAGAGAGCATCTCAAATCCATATGCTCATCACCAACAGAATGTGCAGATAAGTTAAGCAAATCGCTCGTGATTGTGGGTGAAACCGGATA...
Protein
Download Protein FASTA257 aa · TkAUNG067160|TK1151|PROTEIN
MALRLPLLNAYSDKGATFDNGVNFAVAASTALDLPFFLARGILRPPLPPLSVQLQWFREHLKSICSSPTECADKLSKSLVIVGETGYNDIGYPTLRGKSVQEISTYIPFVVEAIINTIRELIRAGASQVIVPGNFPLGCFPWVVKMVRSNDPTSYDDVGCLKSYNNLTSSMNNQLQQHLASLRIEFPQAVILYADYYNAFLSIFRNASSLGKCIYALISFNFTTNCLKLIYDFYNFNTSSSSSYKVKFLVADRKYQF
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG067160 |
|---|---|
| TK1151 ID | TkAUNG067160 |
| OH-1004 ID | LXL04_010314 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 41.700 |
| Protein coverage (%) | TK1151 81.323 / OH-1004 26.493Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG067160 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | ChrUn:19517991-19518856 (+) | |||||||||
| Description | Similar to At1g28600: GDSL esterase/lipase At1g28600 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005976 polysaccharide metabolic process Biological Process GO:0016042 lipid catabolic process Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005576 extracellular region Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0009507 chloroplast Cellular Component GO:0016788 hydrolase activity, acting on ester bonds Molecular Function GO:0046555 acetylxylan esterase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G28580 ath:AT1G28590 ath:AT1G28600 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00657Lipase_GDSL16-199 aaPF06908YpsA107-195 aaPF11934DUF3452169-208 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG067160 | PF00657 | Lipase_GDSL | 16 | 199 | 4.7e-11 | 44.0 |
| TkAUNG067160 | PF06908 | YpsA | 107 | 195 | 0.059 | 14.1 |
| TkAUNG067160 | PF11934 | DUF3452 | 169 | 208 | 0.065 | 13.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.