Gene Card
Gene overview
cDNA / CDS / Protein Sequences
599 bp · TkAUNG044230|TK1151|cDNA
GTATTGCAGATGATTTATAGACCTGATAATGGAGAGATTCTTGGAGTTCATATATTTGGAATGCATGCTGCTGACCTTATTCATGAAGCATCAAATGCTATTGCTTTAGGAACACGTATCCAGGATATTAAATACGCGGTTCATGCCCATCCAACTTTATCCGAAGTGATCGATGAACTATTTAAATCAGCCAAGGTAAGGGGGAAAGTGTCATTAGTTCCTCCTCAACCCACATTCTCTCTCGTTTTACAATGGTTAAA...
333 bp · TkAUNG044230|TK1151|CDS
ATGATTTATAGACCTGATAATGGAGAGATTCTTGGAGTTCATATATTTGGAATGCATGCTGCTGACCTTATTCATGAAGCATCAAATGCTATTGCTTTAGGAACACGTATCCAGGATATTAAATACGCGGTTCATGCCCATCCAACTTTATCCGAAGTGATCGATGAACTATTTAAATCAGCCAAGGTAAGGGGGAAAGTGTCATTAGTTCCTCCTCAACCCACATTCTCTCTCGTTTTACAATGGTTAAAAGCGACGTT...
Protein
Download Protein FASTA110 aa · TkAUNG044230|TK1151|PROTEIN
MIYRPDNGEILGVHIFGMHAADLIHEASNAIALGTRIQDIKYAVHAHPTLSEVIDELFKSAKVRGKVSLVPPQPTFSLVLQWLKATFLVRLLSQLQCKLVSGQETVDLPQ
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG044230 |
|---|---|
| TK1151 ID | TkAUNG044230 |
| OH-1004 ID | LXL04_001264 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 18.122Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG044230 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | ChrUn:12294717-12295701 (+) | |||||||||
| Description | Similar to LPD1: Dihydrolipoyl dehydrogenase 1, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process GO:0006103 2-oxoglutarate metabolic process Biological Process GO:0045333 cellular respiration Biological Process GO:0046685 response to arsenic-containing substance Biological Process GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0009570 chloroplast stroma Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G16950 ath:AT4G16155 cthr:CTHT_0048590 hma:rrnAC2953 syn:slr1096 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02852Pyr_redox_dim1-56 aaPF30184DUF861251-98 aaPF02852Pyr_redox_dim70-82 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG044230 | PF02852 | Pyr_redox_dim | 1 | 56 | 4e-14 | 53.5 |
| TkAUNG044230 | PF30184 | DUF8612 | 51 | 98 | 0.15 | 12.6 |
| TkAUNG044230 | PF02852 | Pyr_redox_dim | 70 | 82 | 4e-14 | 53.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.