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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG039360
Reference: TK1151 Chr: ChrUn Coordinates: 10981925-10985997 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2282 bp · TkAUNG039360|TK1151|cDNA

CGATACCACAAAAGCACTTACATACGACACCGGCATAAAATCGCCTGTTTCGCCATTACGACTTGGACCAGCGCCTAGCAGCAGCTCAAGCTCATCCGGGTCAATATCGGGTCGGAATGAAAAACAACCTCTCCTTCGATCAGCTTCTAGAAAGTCCGTTTCGGGCGGTGCCATTAAACCCACTCCGGTGAGTTATCGGTTGATAGTTCTCCAAAATGTTCGGCATGCGGCTTATCTGCATCAAAATCGGGACACAACCC...

CDS

Download CDS FASTA

630 bp · TkAUNG039360|TK1151|CDS

ATGATAACAACCCGGACCTCAAAATCAGACGTATTAAGTCTCGGAGCCGGGAACTACGGCCACGGCAGCATAATGCGAGGCGGGACAGGCGGCGCCACCACTAAACCCGCCGGAACTGAACCCCCTGTTTCGATTATTGAGACAAGGAAATTATCGAGGGATCCTGAAGAGCTGAGGAAGGTGGGAAACGAGTACTACAAAAGGGGAAACATAATTGAGGCACTAGGTTACTACGATCACGCGATTTCAATCTCACCGGA...

Protein

Download Protein FASTA

209 aa · TkAUNG039360|TK1151|PROTEIN

MITTRTSKSDVLSLGAGNYGHGSIMRGGTGGATTKPAGTEPPVSIIETRKLSRDPEELRKVGNEYYKRGNIIEALGYYDHAISISPEKPAYRCNRGAALMFLDRLNEAAKEYNEALKLDSGYIRAHRRLGSLLISLGQVENARKHLYFPGYQPDPNELMKLEAVSKHLNNCMNYRKVVIGPVFCENVMLQLFPEPILVFSYLHVNRKHC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG039360
TK1151 IDTkAUNG039360
OH-1004 IDLXL04_016607
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 84.689 / OH-1004 26.941
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG039360
LocationChrUn:10981925-10985997 (+)
DescriptionSimilar to TTL1: TPR repeat-containing thioredoxin TTL1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g53300 Involved in responses to osmotic stress and abscisic acid (ABA).
The Arabidopsis tetratricopeptide repeat-containing protein TTL1 is required for osmotic stress responses and abscisic acid sensitivity.2006 · DOI: 10.1104/pp.106.085191
The Arabidopsis tetratricopeptide thioredoxin-like gene family is required for osmotic stress tolerance and male sporogenesis.2012 · DOI: 10.1104/pp.111.188920
At2g42580 Involved in osmotic and salt stress tolerance. No verified direct reference in this release
At3g58620 Involved in osmotic and salt stress tolerance.
The Arabidopsis tetratricopeptide thioredoxin-like gene family is required for osmotic stress tolerance and male sporogenesis.2012 · DOI: 10.1104/pp.111.188920
At3g14950 Plays a role in the transmission of male gametophyte.
The Arabidopsis tetratricopeptide thioredoxin-like gene family is required for osmotic stress tolerance and male sporogenesis.2012 · DOI: 10.1104/pp.111.188920

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016607 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0006950 response to stress Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009555 pollen development Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009733 response to auxin Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
KEGG gene cross-reference
ath:AT1G53300
ath:AT2G42580
ath:AT3G14950
ath:AT3G58620
mmu:56354
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.490
Rank 1 · TkAUNG039360 · TK1151
Nucleus0.314
Rank 2 · TkAUNG039360 · TK1151
Mitochondrion0.126
Rank 3 · TkAUNG039360 · TK1151
Peroxisome0.097
Rank 4 · TkAUNG039360 · TK1151
Cell membrane0.067
Rank 5 · TkAUNG039360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29407CFAP70_TPR_C53-119 aa
PF13371TPR_953-89 aa
PF13428TPR_1455-96 aa
PF07719TPR_256-87 aa
PF10952DUF275360-88 aa
PF13374TPR_1061-84 aa
PF13414TPR_1162-99 aa
PF00515TPR_162-87 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG039360PF29407CFAP70_TPR_C531198.2e-0522.9
TkAUNG039360PF13371TPR_953890.0002721.6
TkAUNG039360PF13428TPR_1455961.9e-0628.7
TkAUNG039360PF07719TPR_256872.5e-1452.8
TkAUNG039360PF10952DUF275360880.09213.6
TkAUNG039360PF13374TPR_1061840.007417.0
TkAUNG039360PF13414TPR_1162991.5e-1350.9
TkAUNG039360PF00515TPR_162876.4e-1245.5
TkAUNG039360PF13181TPR_862871.7e-0834.7
TkAUNG039360PF13432TPR_16621223.8e-0524.7
TkAUNG039360PF13431TPR_1765742.4e-0525.0
TkAUNG039360PF13424TPR_12651187.3e-0523.6
TkAUNG039360PF14559TPR_19671134.3e-0627.7
TkAUNG039360PF13371TPR_9731200.0002721.6
TkAUNG039360PF13431TPR_17771082.4e-0525.0
TkAUNG039360PF25060ARM_TT21_2nd791480.002618.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9MAH1Arabidopsis thalianasp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL147.700%Swiss-ProtMedium
Q9SIN1Arabidopsis thalianasp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL346.300%Swiss-ProtMedium
Q84JR9Arabidopsis thalianasp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL445.200%Swiss-ProtMedium
F4IXE4Arabidopsis thalianasp|F4IXE4|TTL2_ARATH TPR repeat-containing thioredoxin TTL230.100%Swiss-ProtMedium

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