Gene Card
Gene overview
cDNA / CDS / Protein Sequences
777 bp · TkAUNG034460|TK1151|cDNA
ATGGCGGGAGGCAGTTATGTTGATAGCTTGTTGAATCTGGAATCGTTGAGAAAGAGCTTGGTGCGACAAGAAGACACCATCATCTTCAGTCTGATGATTGAGAGATCAAAGTATCCGATCAATTCACCTGTGTACGATGAAGACATGACCCCTGCTTTCTCTACTTCTTTGTTCCACTTCTTCATTAAGGAATCCGAAGCTCTTCAAGCTAAGGCTGGTCGTTACTTGTCCCCTGAAGAGAATGCCTTTTACCCCCATAA...
777 bp · TkAUNG034460|TK1151|CDS
ATGGCGGGAGGCAGTTATGTTGATAGCTTGTTGAATCTGGAATCGTTGAGAAAGAGCTTGGTGCGACAAGAAGACACCATCATCTTCAGTCTGATGATTGAGAGATCAAAGTATCCGATCAATTCACCTGTGTACGATGAAGACATGACCCCTGCTTTCTCTACTTCTTTGTTCCACTTCTTCATTAAGGAATCCGAAGCTCTTCAAGCTAAGGCTGGTCGTTACTTGTCCCCTGAAGAGAATGCCTTTTACCCCCATAA...
Protein
Download Protein FASTA258 aa · TkAUNG034460|TK1151|PROTEIN
MAGGSYVDSLLNLESLRKSLVRQEDTIIFSLMIERSKYPINSPVYDEDMTPAFSTSLFHFFIKESEALQAKAGRYLSPEENAFYPHNSPPSLLPPLNHTPILHPPGACININEKILNLYLKTLLPLVAVEGEDGNYAATAATDLNCLQALSRRIHFGKFVAEVKFRDAPEDYTPAIRAKQDREALMKLLTFESVEETIKKRVEKKAMVFGQDVELQETDHNGKKYKVNPSVVSQLYGEWVIPPLTKFVQVEYLLRRLD
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG034460 |
|---|---|
| TK1151 ID | TkAUNG034460 |
| OH-1004 ID | LXL04_006567 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 51.000 |
| Protein coverage (%) | TK1151 96.512 / OH-1004 76.489Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG034460 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | ChrUn:9361869-9363589 (+) | |||||||||
| Description | Similar to CM1: Chorismate mutase 1, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000162 L-tryptophan biosynthetic process Biological Process GO:0008652 amino acid biosynthetic process Biological Process GO:0009073 aromatic amino acid family biosynthetic process Biological Process GO:0010597 green leaf volatile biosynthetic process Biological Process GO:0042742 defense response to bacterium Biological Process GO:0046417 chorismate metabolic process Biological Process GO:1901747 prephenate(2-) biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0009570 chloroplast stroma Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G69370 ath:AT3G29200 ath:AT5G10870 zma:100272431 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF11159DUF29396-24 aaPF01817CM_247-69 aaPF01817CM_2137-241 aaPF11159DUF2939179-235 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG034460 | PF11159 | DUF2939 | 6 | 24 | 0.24 | 12.4 |
| TkAUNG034460 | PF01817 | CM_2 | 47 | 69 | 2.3e-08 | 34.9 |
| TkAUNG034460 | PF01817 | CM_2 | 137 | 241 | 2.3e-08 | 34.9 |
| TkAUNG034460 | PF11159 | DUF2939 | 179 | 235 | 0.24 | 12.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.