LXL04_006567 | RubberDandelionOmics

Gene overview

LXL04_006567

Reference: OH-1004 Chr: Chr02 Coordinates: 13536498-13538760 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

960 bp · LXL04_006567|LXL04_006567|OH1004|cDNA

ATGGAGGCGAAGCTACTCAAAGTCCCCTTTTCCCCTGCCATCTCCGCCACTTCTTTATCTAAATCCTGTAGACCAATTACTCCATTTCGTCCTCCAATGTGGAAAAACTGGAGCTTGCAGTTGCAGACACCCAATTTAGGGGTTTCGAAGAATGGCATTCAATCCGTTCAAGCATCCGCGACTTCATCTGGATCGAAAAACGAGACACGAATTGACGAAAGTGAGATCTATACTCTCGATGGTATAAGAAGCTCGTTAAT...

CDS

Download CDS FASTA

960 bp · LXL04_006567|LXL04_006567|OH1004|CDS

ATGGAGGCGAAGCTACTCAAAGTCCCCTTTTCCCCTGCCATCTCCGCCACTTCTTTATCTAAATCCTGTAGACCAATTACTCCATTTCGTCCTCCAATGTGGAAAAACTGGAGCTTGCAGTTGCAGACACCCAATTTAGGGGTTTCGAAGAATGGCATTCAATCCGTTCAAGCATCCGCGACTTCATCTGGATCGAAAAACGAGACACGAATTGACGAAAGTGAGATCTATACTCTCGATGGTATAAGAAGCTCGTTAAT...

Protein

Download Protein FASTA

319 aa · LXL04_006567|LXL04_006567|OH1004|PROTEIN

MEAKLLKVPFSPAISATSLSKSCRPITPFRPPMWKNWSLQLQTPNLGVSKNGIQSVQASATSSGSKNETRIDESEIYTLDGIRSSLIRQEDSIIFSLVERAQFCYNEDTYDPNAFFMDGFQGSLVEFMVKETEKIYSQVGRYKSPDEHPFFPNDLPDPMLPPLQYPQVLHSCANGININHKIWDIYFKDLLPRLVKEGNDGNCGSAATCDSTCLQALSKRIHYGKFVAEAKFRASPSDYEAAIKSQDKKKLMDLLTYPEV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006567`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006567

Location Chr02:13536498-13538760 (+)

Description Similar to CM1: Chorismate mutase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g29200`	May play a role in chloroplast biogenesis.	No verified direct reference in this release
`At1g69370`	May play a role in chloroplast biogenesis.	No verified direct reference in this release
`At5g10870`	Chorismate mutase 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006567 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000162 L-tryptophan biosynthetic process Biological Process

GO:0008652 amino acid biosynthetic process Biological Process

GO:0009073 aromatic amino acid family biosynthetic process Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0046417 chorismate metabolic process Biological Process

GO:1901747 prephenate(2-) biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT1G69370

ath:AT3G29200

ath:AT5G10870

zma:100272431

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.957

Rank 1 · LXL04_006567 · OH-1004

Mitochondrion0.069

Rank 2 · LXL04_006567 · OH-1004

Cytoplasm0.026

Rank 3 · LXL04_006567 · OH-1004

Nucleus0.021

Rank 4 · LXL04_006567 · OH-1004

Cell membrane0.015

Rank 5 · LXL04_006567 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01817.27CM_2206-310 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006567	`PF01817.27`	CM_2	206	310	1e-11	45.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P42738`	Arabidopsis thaliana	Chorismate mutase 1, chloroplastic	64.238%	Swiss-Prot	strong database homology
`Q9C544`	Arabidopsis thaliana	Chorismate mutase 3, chloroplastic	60.856%	Swiss-Prot	strong database homology
`Q9S7H4`	Arabidopsis thaliana	Chorismate mutase 2	54.762%	Swiss-Prot	strong database homology

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