RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG022130
Reference: TK1151 Chr: ChrUn Coordinates: 5871626-5873840 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2090 bp · TkAUNG022130|TK1151|cDNA

AGACTTTACATGAACTTAAATGGCAAATTTGACCAACTGCTCAAAATTATTCACCGTGACCAACACACTCTCACACAATTGACAAACCCACTCTTATCTTGGTTTCAAACTGTGTTCTTCAAGATTTTGAAAGCACCTCCTAAAACCCTAATTGATCCAATAAAATCTTGAAAAATGTTGCTCCATCCAACAATTTCCCAATCTCCACCACACCCACAATCGGTTGCTCTCTCATCATCTTCATCTTCCCTCTCTAATTC...

CDS

Download CDS FASTA

1653 bp · TkAUNG022130|TK1151|CDS

ATGTTGCTCCATCCAACAATTTCCCAATCTCCACCACACCCACAATCGGTTGCTCTCTCATCATCTTCATCTTCCCTCTCTAATTCTCTCAATTTCCCATATGGGTTTCGAAGTTCACCCCTCAAAAAATCCCAATCTACTTCGTATATCGTCAAAAACCTTCATTCTTCGTCGTCTTCATCAGTTTCAAAAGTGTATAACTATGGCACAGTGGACCACGAGAAAAAGCCTGGAACGACGGTCACCTGGAAAGCCATTTA...

Protein

Download Protein FASTA

550 aa · TkAUNG022130|TK1151|PROTEIN

MLLHPTISQSPPHPQSVALSSSSSSLSNSLNFPYGFRSSPLKKSQSTSYIVKNLHSSSSSSVSKVYNYGTVDHEKKPGTTVTWKAIYKRISLMGNPEKGATEVLNQWENEGKKVTKWELCRIVKEMRKYGRHKLALEIYNWMNNRPERFRISSSDAAIQLDLVSKVHGISGAEDYFKSMPNSLMDKRIYGALLNAYVRAKMVEKAESLLVEMKKKDYASHALPFNVMMTLYMNLKDQDRVESLVSEMIQNNIGLDLYSYN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG022130
TK1151 IDTkAUNG022130
OH-1004 IDLXL04_010564
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG022130
LocationChrUn:5871626-5873840 (-)
DescriptionSimilar to At1g02150: Pentatricopeptide repeat-containing protein At1g02150
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g02150 Pentatricopeptide repeat-containing protein At1g02150. No verified direct reference in this release
At4g02820 Pentatricopeptide repeat-containing protein At4g02820, mitochondrial. No verified direct reference in this release
At1g80270 Pentatricopeptide repeat-containing protein At1g80270, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010564 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:1902775 mitochondrial large ribosomal subunit assembly Biological Process
GO:1903427 negative regulation of reactive oxygen species biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0140978 mitochondrial large ribosomal subunit binding Molecular Function
KEGG gene cross-reference
ath:AT1G02150
ath:AT1G60770
ath:AT2G20710
ath:AT4G02820
ath:AT4G21705
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.476
Rank 1 · TkAUNG022130 · TK1151
Plastid0.404
Rank 2 · TkAUNG022130 · TK1151
Nucleus0.069
Rank 3 · TkAUNG022130 · TK1151
Cytoplasm0.031
Rank 4 · TkAUNG022130 · TK1151
Cell membrane0.010
Rank 5 · TkAUNG022130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_24100-207 aa
PF29070MSC6_N108-209 aa
PF13812PPR_3120-130 aa
PF01535PPR124-130 aa
PF13428TPR_14126-140 aa
PF13041PPR_2128-145 aa
PF00515TPR_1128-139 aa
PF13424TPR_12129-140 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG022130PF23276TPR_241002078.9e-0523.1
TkAUNG022130PF29070MSC6_N1082096.4e-1142.7
TkAUNG022130PF13812PPR_31201305.2e-0627.2
TkAUNG022130PF01535PPR1241308e-2586.0
TkAUNG022130PF13428TPR_141261401.5e-0526.0
TkAUNG022130PF13041PPR_21281454.2e-2072.3
TkAUNG022130PF00515TPR_11281390.0008519.8
TkAUNG022130PF13424TPR_121291400.003418.2
TkAUNG022130PF17177PPR_long1542740.0003620.7
TkAUNG022130PF01535PPR1711808e-2586.0
TkAUNG022130PF13424TPR_121822090.003418.2
TkAUNG022130PF23220HAT_Syf1_M1842360.08313.5
TkAUNG022130PF12854PPR_11852130.0002421.5
TkAUNG022130PF14559TPR_191852160.0004421.2
TkAUNG022130PF24760TPR_IF140_C1862130.1812.9
TkAUNG022130PF13181TPR_81872070.02815.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LPS6Arabidopsis thalianasp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g0215050.800%Swiss-ProtHigh
Q9SY07Arabidopsis thalianasp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial24.900%Swiss-ProtLow
Q9C977Arabidopsis thalianasp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial24.800%Swiss-ProtLow

JBrowse

View in Genome Browser