TkAUNG021640 | RubberDandelionOmics

Gene overview

TkAUNG021640

Reference: TK1151 Chr: ChrUn Coordinates: 5761587-5762681 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1002 bp · TkAUNG021640|TK1151|cDNA

NNNGTTAAGAGCCGAACCGATTGGCAGAGCTCGTGCGCGATTTTGGCTAGCAAAGTGTTACCGAAGCCGCTAACTATCGCCGATCTATCACCGGCGCCATTGCACGGTTCTACGCTGCGCGTTGCTTATCAAGGTGTAGCTGGTGCGTATAGTGAAGCCGCTGCCGGTAAAGCGTATCCGAATTGTGAGGCAATTCCTTGTGACCAATTCGAAGTTGCATTTCAAGCAGTGGAGCTTTGGATCGCAGATCGCGCTGTTTT...

CDS

Download CDS FASTA

1002 bp · TkAUNG021640|TK1151|CDS

NNNGTTAAGAGCCGAACCGATTGGCAGAGCTCGTGCGCGATTTTGGCTAGCAAAGTGTTACCGAAGCCGCTAACTATCGCCGATCTATCACCGGCGCCATTGCACGGTTCTACGCTGCGCGTTGCTTATCAAGGTGTAGCTGGTGCGTATAGTGAAGCCGCTGCCGGTAAAGCGTATCCGAATTGTGAGGCAATTCCTTGTGACCAATTCGAAGTTGCATTTCAAGCAGTGGAGCTTTGGATCGCAGATCGCGCTGTTTT...

Protein

Download Protein FASTA

333 aa · TkAUNG021640|TK1151|PROTEIN

XVKSRTDWQSSCAILASKVLPKPLTIADLSPAPLHGSTLRVAYQGVAGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHKLHIVGEVQLSVHHCLLALPGVRKEYLNRVISHPQALSQCELTLTKLGLTVTREAVDDTAGAAEFVAANNLRDTAAIASARAAELYGLNILADGIQDDSSNVTRFVMLAREPIIPRIDIPFKTSIVFAHDKGTSVLFKVLSAFAFRNINLTKI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG021640`
TK1151 ID	TkAUNG021640
OH-1004 ID	LXL04_013137
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	91.500
Protein coverage (%)	TK1151 99.700 / OH-1004 83.257 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG021640

Location ChrUn:5761587-5762681 (+)

Description Similar to ADT6: Arogenate dehydratase/prephenate dehydratase 6, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08250`	Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine.	Phenylalanine biosynthesis in Arabidopsis thaliana. Identification and characterization of arogenate dehydratases.2007 · DOI: 10.1074/jbc.m702662200
`At2g27820`	Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine.	Phenylalanine biosynthesis in Arabidopsis thaliana. Identification and characterization of arogenate dehydratases.2007 · DOI: 10.1074/jbc.m702662200
`At5g22630`	Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.	Phenylalanine biosynthesis in Arabidopsis thaliana. Identification and characterization of arogenate dehydratases.2007 · DOI: 10.1074/jbc.m702662200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013137 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006571 L-tyrosine biosynthetic process Biological Process

GO:0006952 defense response Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009094 L-phenylalanine biosynthetic process Biological Process

GO:0010244 response to low fluence blue light stimulus by blue low-fluence system Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004664 prephenate dehydratase activity Molecular Function

GO:0047769 arogenate dehydratase activity Molecular Function

KEGG gene cross-reference

ath:AT1G08250

ath:AT2G27820

ath:AT3G44720

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

No result was found for this query.

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00800PDT41-218 aa

PF01842ACT242-274 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG021640	`PF00800`	PDT	41	218	9.1e-59	199.0
TkAUNG021640	`PF01842`	ACT	242	274	0.0012	19.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SGD6`	Arabidopsis thaliana	sp\|Q9SGD6\|AROD6_ARATH Arogenate dehydratase/prephenate dehydratase 6, chloroplastic	75.100%	Swiss-Prot	High
`Q9ZUY3`	Arabidopsis thaliana	sp\|Q9ZUY3\|AROD3_ARATH Arogenate dehydratase 3, chloroplastic	75.900%	Swiss-Prot	High
`Q9FNJ8`	Arabidopsis thaliana	sp\|Q9FNJ8\|AROD5_ARATH Arogenate dehydratase 5, chloroplastic	75.000%	Swiss-Prot	High

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