TkAUNG014060 | RubberDandelionOmics

Gene overview

TkAUNG014060

Reference: TK1151 Chr: ChrUn Coordinates: 3607477-3608348 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

546 bp · TkAUNG014060|TK1151|cDNA

ATGCGGGTCGGCCTTCGGAGCACGAGTCTCTGGTGGAAAGGTTTGCTCCGGATATACGGGTGCGGAAGAATGGTATCCGAAGCGAGACATACCGGAGGGAAGACATCGGCTTCCGAAGGTGTGGATGTAATCTCGGATAGGAAGGTTGCGGAAGAAAGGTATCCGAAGCGAAAGGGAGACATCGGCATCCGAAGCGGAGATGGAATCCGAAGCAGAGGAGCCTTCCGAAGCAGAGAAGGAAACCGAAGAACCACCGGCAT...

CDS

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546 bp · TkAUNG014060|TK1151|CDS

ATGCGGGTCGGCCTTCGGAGCACGAGTCTCTGGTGGAAAGGTTTGCTCCGGATATACGGGTGCGGAAGAATGGTATCCGAAGCGAGACATACCGGAGGGAAGACATCGGCTTCCGAAGGTGTGGATGTAATCTCGGATAGGAAGGTTGCGGAAGAAAGGTATCCGAAGCGAAAGGGAGACATCGGCATCCGAAGCGGAGATGGAATCCGAAGCAGAGGAGCCTTCCGAAGCAGAGAAGGAAACCGAAGAACCACCGGCAT...

Protein

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181 aa · TkAUNG014060|TK1151|PROTEIN

MRVGLRSTSLWWKGLLRIYGCGRMVSEARHTGGKTSASEGVDVISDRKVAEERYPKRKGDIGIRSGDGIRSRGAFRSREGNRRTTGMMDPGTGPTTATPSTDVPPSVGTLHSTDTPAAALQRWVSVVSYALGIYILNLLIGFISPQVDPEFQDLSDGPTLPSWNSDEFRPCVRRLLEFKFW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG014060`
TK1151 ID	TkAUNG014060
OH-1004 ID	LXL04_002329
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 52.486 / OH-1004 71.970 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG014060

Location ChrUn:3607477-3608348 (+)

Description Similar to RER1A: Protein RER1A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39220`	Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	No verified direct reference in this release
`At2g21600`	Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002329 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006621 protein retention in ER lumen Biological Process

GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Biological Process

GO:0007528 neuromuscular junction development Biological Process

GO:0035437 maintenance of protein localization in endoplasmic reticulum Biological Process

GO:0071340 skeletal muscle acetylcholine-gated channel clustering Biological Process

GO:1903078 positive regulation of protein localization to plasma membrane Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005793 endoplasmic reticulum-Golgi intermediate compartment Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005801 cis-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G21600

ath:AT4G39220

bta:100125922

gga:419397

rno:298675

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.305

Rank 1 · TkAUNG014060 · TK1151

Cytoplasm0.282

Rank 2 · TkAUNG014060 · TK1151

Mitochondrion0.207

Rank 3 · TkAUNG014060 · TK1151

Cell membrane0.186

Rank 4 · TkAUNG014060 · TK1151

Endoplasmic reticulum0.140

Rank 5 · TkAUNG014060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11733NP1-WLL28-90 aa

PF03248Rer1125-181 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG014060	`PF11733`	NP1-WLL	28	90	0.092	13.3
TkAUNG014060	`PF03248`	Rer1	125	181	9.7e-19	68.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O48670`	Arabidopsis thaliana	sp\|O48670\|RER1A_ARATH Protein RER1A	66.100%	Swiss-Prot	Low
`O48671`	Arabidopsis thaliana	sp\|O48671\|RER1B_ARATH Protein RER1B	67.900%	Swiss-Prot	Low

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