TkAUNG012320 | RubberDandelionOmics

Gene overview

TkAUNG012320

Reference: TK1151 Chr: ChrUn Coordinates: 3000732-3001599 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

609 bp · TkAUNG012320|TK1151|cDNA

ATGGAAGAATTCACGGGTCACAAGTTCCTGCTGAGAATGCGGGACAAAACTTTGGCTTTTATTGGGGATTCACTGGGTCGACAGCAGTTCCAATCTCTAATGTGCATGGTGACAGGTGGAGAAGAAAGACCCGATGTGCTTGATGTGGGGTATGAGTATGGTCTGGTTAAAGCTCGTGGTGCTGTAAGGCCCGATGGATGGGCTTATCGGTTTCCTAGTACCAACACCACTATCCTCTACTATTGGTCAGCAAGTTTATG...

CDS

Download CDS FASTA

609 bp · TkAUNG012320|TK1151|CDS

ATGGAAGAATTCACGGGTCACAAGTTCCTGCTGAGAATGCGGGACAAAACTTTGGCTTTTATTGGGGATTCACTGGGTCGACAGCAGTTCCAATCTCTAATGTGCATGGTGACAGGTGGAGAAGAAAGACCCGATGTGCTTGATGTGGGGTATGAGTATGGTCTGGTTAAAGCTCGTGGTGCTGTAAGGCCCGATGGATGGGCTTATCGGTTTCCTAGTACCAACACCACTATCCTCTACTATTGGTCAGCAAGTTTATG...

Protein

Download Protein FASTA

202 aa · TkAUNG012320|TK1151|PROTEIN

MEEFTGHKFLLRMRDKTLAFIGDSLGRQQFQSLMCMVTGGEERPDVLDVGYEYGLVKARGAVRPDGWAYRFPSTNTTILYYWSASLCDLEPIKNSADFAMHLDRPPAFLRRFLHRFNVLVLNTGHHWNRGKINANRWIMYVGGVPNTNRRIADIAGAKNLTVHSIVRWVDSQLPLFPDLKAFYRSLSPRHFFKRGLEYWRYL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG012320`
TK1151 ID	TkAUNG012320
OH-1004 ID	LXL04_002305
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	74.400
Protein coverage (%)	TK1151 95.050 / OH-1004 39.315 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG012320

Location ChrUn:3000732-3001599 (-)

Description Similar to TBL16: Protein trichome birefringence-like 16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20680`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g64020`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g37720`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g06080`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At1g70230`	Xyloglucan acetyltransferase that catalyzes the acetylation of fucosylated Gal residues on xyloglucan side chains.	O-acetylation of Arabidopsis hemicellulose xyloglucan requires AXY4 or AXY4L, proteins with a TBL and DUF231 domain.2011 · DOI: 10.1105/tpc.111.091728 Xyloglucan O-acetyltransferases from Arabidopsis thaliana and Populus trichocarpa catalyze acetylation of fucosylated galactose residues on xyloglucan side chains.2018 · DOI: 10.1007/s00425-018-2972-0

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002305 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007623 circadian rhythm Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G37720

ath:AT3G06080

ath:AT5G06230

ath:AT5G20680

ath:AT5G64020

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.313

Rank 1 · TkAUNG012320 · TK1151

Extracellular0.209

Rank 2 · TkAUNG012320 · TK1151

Cell membrane0.067

Rank 3 · TkAUNG012320 · TK1151

Endoplasmic reticulum0.063

Rank 4 · TkAUNG012320 · TK1151

Lysosome / Vacuole0.061

Rank 5 · TkAUNG012320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13839PC-Esterase3-193 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG012320	`PF13839`	PC-Esterase	3	193	3.9e-36	126.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K5L5`	Arabidopsis thaliana	sp\|F4K5L5\|TBL16_ARATH Protein trichome birefringence-like 16	67.500%	Swiss-Prot	High
`Q0WPS0`	Arabidopsis thaliana	sp\|Q0WPS0\|TBL14_ARATH Protein trichome birefringence-like 14	66.000%	Swiss-Prot	High
`O80940`	Arabidopsis thaliana	sp\|O80940\|TBL15_ARATH Protein trichome birefringence-like 15	61.800%	Swiss-Prot	High
`Q9LDG2`	Arabidopsis thaliana	sp\|Q9LDG2\|TBL10_ARATH Protein trichome birefringence-like 10	27.300%	Swiss-Prot	Low
`O04523`	Arabidopsis thaliana	sp\|O04523\|TBL27_ARATH Xyloglucan O-acetyltransferase 1	35.000%	Swiss-Prot	Medium

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