TkAUNG004950 | RubberDandelionOmics

Gene overview

TkAUNG004950

Reference: TK1151 Chr: ChrUn Coordinates: 1483474-1484584 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

927 bp · TkAUNG004950|TK1151|cDNA

ATGTTAATGAACAAGACAATGCCTTCCGCTGTGGGTTATCAACCTACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCTGTTTATGTACCTGCAGATGATTTGACCGACCCTGCCCCTGCTACGACATTTGCACATTTAGATGCTACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTC...

CDS

Download CDS FASTA

927 bp · TkAUNG004950|TK1151|CDS

ATGTTAATGAACAAGACAATGCCTTCCGCTGTGGGTTATCAACCTACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCTGTTTATGTACCTGCAGATGATTTGACCGACCCTGCCCCTGCTACGACATTTGCACATTTAGATGCTACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTC...

Protein

Download Protein FASTA

308 aa · TkAUNG004950|TK1151|PROTEIN

MLMNKTMPSAVGYQPTLSTEMGTLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYDTAQKVKETLQRYKELQDIIAILGLDELSEDDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVALAETIRGFQLILSGELDGLPEQAFYLVEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWLTMALMGGFARIGNNEITVLVNDAEKSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG004950`
TK1151 ID	TkAUNG004950
OH-1004 ID	LXL04_011315
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	75.300
Protein coverage (%)	TK1151 60.390 / OH-1004 33.453 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkAUNG004950`
Location	ChrUn:1483474-1484584 (+)
Description	Similar to ATPB: ATP synthase subunit beta, mitochondrial
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_011315` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0015986 proton motive force-driven ATP synthesis Biological Process GO:0042776 proton motive force-driven mitochondrial ATP synthesis Biological Process GO:0005743 mitochondrial inner membrane Cellular Component GO:0045259 proton-transporting ATP synthase complex Cellular Component GO:0005524 ATP binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism Molecular Function
KEGG gene cross-reference	dosa:Os05g0553000 zma:542267 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.849

Rank 1 · TkAUNG004950 · TK1151

Mitochondrion0.142

Rank 2 · TkAUNG004950 · TK1151

Cytoplasm0.061

Rank 3 · TkAUNG004950 · TK1151

Nucleus0.034

Rank 4 · TkAUNG004950 · TK1151

Extracellular0.018

Rank 5 · TkAUNG004950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00006ATP-synt_ab4-87 aa

PF22919ATP-synt_VA_C93-172 aa

PF18269T3SS_ATPase_C95-122 aa

PF08984DUF1858104-144 aa

PF02823ATP-synt_DE_N185-258 aa

PF00401ATP-synt_DE261-304 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG004950	`PF00006`	ATP-synt_ab	4	87	1.1e-25	91.2
TkAUNG004950	`PF22919`	ATP-synt_VA_C	93	172	2.9e-17	63.2
TkAUNG004950	`PF18269`	T3SS_ATPase_C	95	122	0.00061	20.3
TkAUNG004950	`PF08984`	DUF1858	104	144	0.045	14.5
TkAUNG004950	`PF02823`	ATP-synt_DE_N	185	258	1.2e-20	73.9
TkAUNG004950	`PF00401`	ATP-synt_DE	261	304	1.8e-08	35.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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