LXL04_011315 | RubberDandelionOmics

Gene overview

LXL04_011315

Reference: OH-1004 Chr: Chr02 Coordinates: 162399642-162402317 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1671 bp · LXL04_011315|LXL04_011315|OH1004|cDNA

ATGGCTTCACGGAGGCTAGCGGCCTCTCTCCTCCGTTCATCTCTCCACCGATCTCCCTCAAAATCTCCATTTACTCACTCTAGTAGAGCTGCACGTACGCGTGCCCAGTCTCACCCTTCCCCCACTGGTTACTTTCTCAACCGAGCAGTCAACTATGCTACATCTGCCGGCGCTACTCCATCGACACCTGCTACTTATGCTGTTCAAGGATCTACAGATGGAAAGATCACTGATGAGTTCACCGGCGCCGGTTCCATCGG...

CDS

Download CDS FASTA

1671 bp · LXL04_011315|LXL04_011315|OH1004|CDS

ATGGCTTCACGGAGGCTAGCGGCCTCTCTCCTCCGTTCATCTCTCCACCGATCTCCCTCAAAATCTCCATTTACTCACTCTAGTAGAGCTGCACGTACGCGTGCCCAGTCTCACCCTTCCCCCACTGGTTACTTTCTCAACCGAGCAGTCAACTATGCTACATCTGCCGGCGCTACTCCATCGACACCTGCTACTTATGCTGTTCAAGGATCTACAGATGGAAAGATCACTGATGAGTTCACCGGCGCCGGTTCCATCGG...

Protein

Download Protein FASTA

556 aa · LXL04_011315|LXL04_011315|OH1004|PROTEIN

MASRRLAASLLRSSLHRSPSKSPFTHSSRAARTRAQSHPSPTGYFLNRAVNYATSAGATPSTPATYAVQGSTDGKITDEFTGAGSIGQVCQVIGAVVDVRFSEGLPPILTALEVLDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDHRGDLKTDHYLPIHREAPSFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011315`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011315

Location Chr02:162399642-162402317 (-)

Description Similar to ATPB: ATP synthase subunit beta, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0553000`	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_011315 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015986 proton motive force-driven ATP synthesis Biological Process

GO:0042776 proton motive force-driven mitochondrial ATP synthesis Biological Process

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0045259 proton-transporting ATP synthase complex Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0046933 proton-transporting ATP synthase activity, rotational mechanism Molecular Function

KEGG gene cross-reference

dosa:Os05g0553000

zma:542267

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.906

Rank 1 · LXL04_011315 · OH-1004

Plastid0.060

Rank 2 · LXL04_011315 · OH-1004

Cytoplasm0.048

Rank 3 · LXL04_011315 · OH-1004

Nucleus0.033

Rank 4 · LXL04_011315 · OH-1004

Cell membrane0.017

Rank 5 · LXL04_011315 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11421.14Synthase_beta1-48 aa

PF02874.30ATP-synt_ab_N89-155 aa

PF00006.32ATP-synt_ab212-433 aa

PF22919.2ATP-synt_VA_C441-514 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011315	`PF11421.14`	Synthase_beta	1	48	2.9e-10	41.4
LXL04_011315	`PF02874.30`	ATP-synt_ab_N	89	155	1.9e-17	64.2
LXL04_011315	`PF00006.32`	ATP-synt_ab	212	433	9.5e-69	232.0
LXL04_011315	`PF22919.2`	ATP-synt_VA_C	441	514	1.5e-15	57.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q01859`	Oryza sativa subsp. japonica	ATP synthase subunit beta, mitochondrial	88.172%	Swiss-Prot	strong database homology

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