TkAUNG004220 | RubberDandelionOmics

Gene overview

TkAUNG004220

Reference: TK1151 Chr: ChrUn Coordinates: 1272459-1278139 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2403 bp · TkAUNG004220|TK1151|cDNA

TTTCCATCCCTTTATTCATCTCCTTATTCCTCCAACATCAATCTAACTGTTTGATACGCGATCTCATTTTCTGTTGAATTTACGAGGTTTCTCTTCGATCAATTCAAGCTGTTTGCATTTTCCATCAATCATGTCGATTTTTGATTCGGATTCGTCCCACGGCAACGAGCACAAACATTTCAGACAAATTAGTCGTGATCGATTGTTGTATGAAATGATTAGATCGGCAAAAAGACCAGACTCAAAATCATCAAGCTGGA...

CDS

Download CDS FASTA

2004 bp · TkAUNG004220|TK1151|CDS

ATGTCGATTTTTGATTCGGATTCGTCCCACGGCAACGAGCACAAACATTTCAGACAAATTAGTCGTGATCGATTGTTGTATGAAATGATTAGATCGGCAAAAAGACCAGACTCAAAATCATCAAGCTGGAAGGTACTAATCATGGACAGAGTTACTGTAAGAATCATGTCATGTTCTTGCAAGATGGCAGACATCACAGATGAAGGAGTTTCATTGGTGGAACAAATTCAAAAGAGAAGACAACCACTACCCTCCATGGA...

Protein

Download Protein FASTA

667 aa · TkAUNG004220|TK1151|PROTEIN

MSIFDSDSSHGNEHKHFRQISRDRLLYEMIRSAKRPDSKSSSWKVLIMDRVTVRIMSCSCKMADITDEGVSLVEQIQKRRQPLPSMDAVYYIQPTKENVDKLLADMSGKSPLYRDAYVFFSSSISRDLIADIKKEPTIKGRLRGMKEMNLEFFAIDSQCFITDHGNALEELYGDEENFRKGDECLNAMANRIATVFASMLEFPFVRYRAAKSLDPTTMTTFCDLLPTKLAAAVWNNLMKYKSLTHFPQIETCDLLILDRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG004220`
TK1151 ID	TkAUNG004220
OH-1004 ID	LXL04_005813
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG004220

Location ChrUn:1272459-1278139 (-)

Description Similar to KEU: SNARE-interacting protein KEULE

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12360`	Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.	No verified direct reference in this release
`At1g02010`	Involved in the vesicle trafficking.	No verified direct reference in this release
`At4g12120`	Involved in the vesicle trafficking.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0252400`	Involved in the vesicle trafficking.	No verified direct reference in this release
`Os06g0135900`	Involved in the vesicle trafficking.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005813 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0006904 vesicle docking involved in exocytosis Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0030141 secretory granule Cellular Component

KEGG gene cross-reference

ath:AT1G02010

ath:AT1G12360

ath:AT4G12120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.719

Rank 1 · TkAUNG004220 · TK1151

Cell membrane0.191

Rank 2 · TkAUNG004220 · TK1151

Nucleus0.184

Rank 3 · TkAUNG004220 · TK1151

Golgi apparatus0.101

Rank 4 · TkAUNG004220 · TK1151

Lysosome / Vacuole0.087

Rank 5 · TkAUNG004220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00995Sec144-642 aa

PF08081RBM1CTR341-352 aa

PF08081RBM1CTR561-581 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG004220	`PF00995`	Sec1	44	642	5.1e-128	429.5
TkAUNG004220	`PF08081`	RBM1CTR	341	352	2.4	9.0
TkAUNG004220	`PF08081`	RBM1CTR	561	581	2.4	9.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5X3`	Arabidopsis thaliana	sp\|Q9C5X3\|KEULE_ARATH SNARE-interacting protein KEULE	67.800%	Swiss-Prot	High
`Q9C5P7`	Arabidopsis thaliana	sp\|Q9C5P7\|SEC1A_ARATH Protein transport Sec1a	61.900%	Swiss-Prot	High
`Q9SZ77`	Arabidopsis thaliana	sp\|Q9SZ77\|SEC1B_ARATH Protein transport Sec1b	58.900%	Swiss-Prot	High
`Q7XWP3`	Oryza sativa subsp. japonica	sp\|Q7XWP3\|SEC1A_ORYSJ Probable protein transport Sec1a	61.000%	Swiss-Prot	High
`Q5VNU3`	Oryza sativa subsp. japonica	sp\|Q5VNU3\|SEC1B_ORYSJ Probable protein transport Sec1b	58.400%	Swiss-Prot	High

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