LXL04_005813 | RubberDandelionOmics

Gene overview

LXL04_005813

Reference: OH-1004 Chr: Chr01 Coordinates: 173823369-173828768 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2007 bp · LXL04_005813|LXL04_005813|OH1004|cDNA

ATGTCGATTTTTGATTCGGATTCGTCCCACGGCAACGAGCACAAACATTTCAGACAAATTAGTCGTGATCGATTGTTGTATGAAATGATTAGATCGGCAAAAAGACCAGACTCAAAATCATCAAGCTGGAAGGTACTAATCATGGACAGAGTTACTGTAAGAATCATGTCATGTTCTTGCAAGATGGCAGACATCACAGATGAAGGAGTTTCATTGGTGGAACAAATTCAAAAGAGAAGACAACCACTACCCTCCATGGA...

CDS

Download CDS FASTA

2007 bp · LXL04_005813|LXL04_005813|OH1004|CDS

ATGTCGATTTTTGATTCGGATTCGTCCCACGGCAACGAGCACAAACATTTCAGACAAATTAGTCGTGATCGATTGTTGTATGAAATGATTAGATCGGCAAAAAGACCAGACTCAAAATCATCAAGCTGGAAGGTACTAATCATGGACAGAGTTACTGTAAGAATCATGTCATGTTCTTGCAAGATGGCAGACATCACAGATGAAGGAGTTTCATTGGTGGAACAAATTCAAAAGAGAAGACAACCACTACCCTCCATGGA...

Protein

Download Protein FASTA

668 aa · LXL04_005813|LXL04_005813|OH1004|PROTEIN

MSIFDSDSSHGNEHKHFRQISRDRLLYEMIRSAKRPDSKSSSWKVLIMDRVTVRIMSCSCKMADITDEGVSLVEQIQKRRQPLPSMDAVYYIQPTKENVDKLLADMSGKSPLYRDAYVFFSSSISRDLIADIKKEPTIKGRLRGMKEMNLEFFAIDSQCFITDHGNALEELYGDEENFRKGDECLNAMANRIATVFASMLEFPFVRYRAAKSLDPTTMTTFCDLLPTKLAAAVWNNLMKYKSLTHFPQIETCDLLILDRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005813`
TK1151 ID	TkAUNG004220
OH-1004 ID	LXL04_005813
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005813

Location Chr01:173823369-173828768 (+)

Description Similar to KEU: SNARE-interacting protein KEULE

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12360`	Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.	No verified direct reference in this release
`At1g02010`	Involved in the vesicle trafficking.	No verified direct reference in this release
`At4g12120`	Involved in the vesicle trafficking.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0252400`	Involved in the vesicle trafficking.	No verified direct reference in this release
`Os06g0135900`	Involved in the vesicle trafficking.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005813 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0006904 vesicle docking involved in exocytosis Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0030141 secretory granule Cellular Component

KEGG gene cross-reference

ath:AT1G02010

ath:AT1G12360

ath:AT4G12120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.718

Rank 1 · LXL04_005813 · OH-1004

Cell membrane0.190

Rank 2 · LXL04_005813 · OH-1004

Nucleus0.185

Rank 3 · LXL04_005813 · OH-1004

Golgi apparatus0.100

Rank 4 · LXL04_005813 · OH-1004

Lysosome / Vacuole0.087

Rank 5 · LXL04_005813 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00995.29Sec144-642 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005813	`PF00995.29`	Sec1	44	642	5.9e-128	429.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C5X3`	Arabidopsis thaliana	SNARE-interacting protein KEULE	67.766%	Swiss-Prot	strong database homology
`Q9C5P7`	Arabidopsis thaliana	Protein transport Sec1a	61.271%	Swiss-Prot	strong database homology
`Q9SZ77`	Arabidopsis thaliana	Protein transport Sec1b	59.098%	Swiss-Prot	strong database homology
`Q7XWP3`	Oryza sativa subsp. japonica	Probable protein transport Sec1a	60.921%	Swiss-Prot	strong database homology
`Q5VNU3`	Oryza sativa subsp. japonica	Probable protein transport Sec1b	59.056%	Swiss-Prot	strong database homology

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